Literature DB >> 27814522

From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response.

Eva A Naumann1, James E Fitzgerald2, Timothy W Dunn3, Jason Rihel4, Haim Sompolinsky5, Florian Engert6.   

Abstract

Detailed descriptions of brain-scale sensorimotor circuits underlying vertebrate behavior remain elusive. Recent advances in zebrafish neuroscience offer new opportunities to dissect such circuits via whole-brain imaging, behavioral analysis, functional perturbations, and network modeling. Here, we harness these tools to generate a brain-scale circuit model of the optomotor response, an orienting behavior evoked by visual motion. We show that such motion is processed by diverse neural response types distributed across multiple brain regions. To transform sensory input into action, these regions sequentially integrate eye- and direction-specific sensory streams, refine representations via interhemispheric inhibition, and demix locomotor instructions to independently drive turning and forward swimming. While experiments revealed many neural response types throughout the brain, modeling identified the dimensions of functional connectivity most critical for the behavior. We thus reveal how distributed neurons collaborate to generate behavior and illustrate a paradigm for distilling functional circuit models from whole-brain data.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  behavioral analysis; calcium imaging; circuit model; two-photon imaging; zebrafish

Mesh:

Year:  2016        PMID: 27814522      PMCID: PMC5111816          DOI: 10.1016/j.cell.2016.10.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  51 in total

1.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Authors:  Misha B Ahrens; Jennifer M Li; Michael B Orger; Drew N Robson; Alexander F Schier; Florian Engert; Ruben Portugues
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

2.  The pretectum: connections and oculomotor-related roles.

Authors:  Paul D R Gamlin
Journal:  Prog Brain Res       Date:  2006       Impact factor: 2.453

Review 3.  Distributed hierarchical processing in the primate cerebral cortex.

Authors:  D J Felleman; D C Van Essen
Journal:  Cereb Cortex       Date:  1991 Jan-Feb       Impact factor: 5.357

4.  Neural control and modulation of swimming speed in the larval zebrafish.

Authors:  Kristen E Severi; Ruben Portugues; João C Marques; Donald M O'Malley; Michael B Orger; Florian Engert
Journal:  Neuron       Date:  2014-07-24       Impact factor: 17.173

Review 5.  Motion-detecting circuits in flies: coming into view.

Authors:  Marion Silies; Daryl M Gohl; Thomas R Clandinin
Journal:  Annu Rev Neurosci       Date:  2014       Impact factor: 12.449

Review 6.  Eye smarter than scientists believed: neural computations in circuits of the retina.

Authors:  Tim Gollisch; Markus Meister
Journal:  Neuron       Date:  2010-01-28       Impact factor: 17.173

7.  Development of the retinofugal projections in the embryonic and larval zebrafish (Brachydanio rerio).

Authors:  J D Burrill; S S Easter
Journal:  J Comp Neurol       Date:  1994-08-22       Impact factor: 3.215

8.  Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.

Authors:  Saul Kato; Harris S Kaplan; Tina Schrödel; Susanne Skora; Theodore H Lindsay; Eviatar Yemini; Shawn Lockery; Manuel Zimmer
Journal:  Cell       Date:  2015-10-17       Impact factor: 41.582

9.  Presynaptic inhibition of spinal sensory feedback ensures smooth movement.

Authors:  Andrew J P Fink; Katherine R Croce; Z Josh Huang; L F Abbott; Thomas M Jessell; Eiman Azim
Journal:  Nature       Date:  2014-05-01       Impact factor: 49.962

10.  Whole-brain activity mapping onto a zebrafish brain atlas.

Authors:  Owen Randlett; Caroline L Wee; Eva A Naumann; Onyeka Nnaemeka; David Schoppik; James E Fitzgerald; Ruben Portugues; Alix M B Lacoste; Clemens Riegler; Florian Engert; Alexander F Schier
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

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  75 in total

1.  All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish.

Authors:  Zhen-Fei Jiao; Chun-Feng Shang; Yu-Fan Wang; Zhe Yang; Chen Yang; Fu-Ning Li; Jin-Ze Xie; Jing-Wei Pan; Ling Fu; Jiu-Lin Du
Journal:  Biomed Opt Express       Date:  2018-11-12       Impact factor: 3.732

Review 2.  Neuronal cell-type classification: challenges, opportunities and the path forward.

Authors:  Hongkui Zeng; Joshua R Sanes
Journal:  Nat Rev Neurosci       Date:  2017-08-03       Impact factor: 34.870

3.  The State of the NIH BRAIN Initiative.

Authors:  Walter Koroshetz; Joshua Gordon; Amy Adams; Andrea Beckel-Mitchener; James Churchill; Gregory Farber; Michelle Freund; Jim Gnadt; Nina S Hsu; Nicholas Langhals; Sarah Lisanby; Guoying Liu; Grace C Y Peng; Khara Ramos; Michael Steinmetz; Edmund Talley; Samantha White
Journal:  J Neurosci       Date:  2018-06-19       Impact factor: 6.167

Review 4.  Computation Through Neural Population Dynamics.

Authors:  Saurabh Vyas; Matthew D Golub; David Sussillo; Krishna V Shenoy
Journal:  Annu Rev Neurosci       Date:  2020-07-08       Impact factor: 12.449

5.  A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish.

Authors:  Martin Haesemeyer; Drew N Robson; Jennifer M Li; Alexander F Schier; Florian Engert
Journal:  Neuron       Date:  2018-05-03       Impact factor: 17.173

6.  Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging.

Authors:  Elena I Dragomir; Vilim Štih; Ruben Portugues
Journal:  Nat Neurosci       Date:  2019-12-02       Impact factor: 24.884

7.  Serotonin Disinhibits a Caenorhabditis elegans Sensory Neuron by Suppressing Ca2+-Dependent Negative Feedback.

Authors:  Paul D E Williams; Jeffrey A Zahratka; Matthew Rodenbeck; Jason Wanamaker; Hilary Linzie; Bruce A Bamber
Journal:  J Neurosci       Date:  2018-01-22       Impact factor: 6.167

Review 8.  Quantifying behavior to solve sensorimotor transformations: advances from worms and flies.

Authors:  Adam J Calhoun; Mala Murthy
Journal:  Curr Opin Neurobiol       Date:  2017-08-30       Impact factor: 6.627

Review 9.  The promise and perils of causal circuit manipulations.

Authors:  Steffen Be Wolff; Bence P Ölveczky
Journal:  Curr Opin Neurobiol       Date:  2018-02-04       Impact factor: 6.627

10.  Learning steers the ontogeny of an efficient hunting sequence in zebrafish larvae.

Authors:  Konstantinos Lagogiannis; Giovanni Diana; Martin P Meyer
Journal:  Elife       Date:  2020-08-10       Impact factor: 8.140

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