Literature DB >> 34323690

Interrogating theoretical models of neural computation with emergent property inference.

Sean R Bittner1, Agostina Palmigiano1, Alex T Piet2,3,4, Chunyu A Duan5, Carlos D Brody2,3,6, Kenneth D Miller1, John Cunningham7.   

Abstract

A cornerstone of theoretical neuroscience is the circuit model: a system of equations that captures a hypothesized neural mechanism. Such models are valuable when they give rise to an experimentally observed phenomenon -- whether behavioral or a pattern of neural activity -- and thus can offer insights into neural computation. The operation of these circuits, like all models, critically depends on the choice of model parameters. A key step is then to identify the model parameters consistent with observed phenomena: to solve the inverse problem. In this work, we present a novel technique, emergent property inference (EPI), that brings the modern probabilistic modeling toolkit to theoretical neuroscience. When theorizing circuit models, theoreticians predominantly focus on reproducing computational properties rather than a particular dataset. Our method uses deep neural networks to learn parameter distributions with these computational properties. This methodology is introduced through a motivational example of parameter inference in the stomatogastric ganglion. EPI is then shown to allow precise control over the behavior of inferred parameters and to scale in parameter dimension better than alternative techniques. In the remainder of this work, we present novel theoretical findings in models of primary visual cortex and superior colliculus, which were gained through the examination of complex parametric structure captured by EPI. Beyond its scientific contribution, this work illustrates the variety of analyses possible once deep learning is harnessed towards solving theoretical inverse problems.
© 2021, Bittner et al.

Entities:  

Keywords:  circuit models; computational biology; deep learning; neuroscience; none; systems biology; theoretical neuroscience

Year:  2021        PMID: 34323690      PMCID: PMC8321557          DOI: 10.7554/eLife.56265

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  58 in total

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Journal:  Nat Neurosci       Date:  2019-09-24       Impact factor: 24.884

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Authors:  Ryan N Gutenkunst; Joshua J Waterfall; Fergal P Casey; Kevin S Brown; Christopher R Myers; James P Sethna
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Authors:  Aman B Saleem; Aslı Ayaz; Kathryn J Jeffery; Kenneth D Harris; Matteo Carandini
Journal:  Nat Neurosci       Date:  2013-11-03       Impact factor: 24.884

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