Literature DB >> 31429824

Brian 2, an intuitive and efficient neural simulator.

Romain Brette1, Dan Fm Goodman2, Marcel Stimberg1.   

Abstract

Brian 2 allows scientists to simply and efficiently simulate spiking neural network models. These models can feature novel dynamical equations, their interactions with the environment, and experimental protocols. To preserve high performance when defining new models, most simulators offer two options: low-level programming or description languages. The first option requires expertise, is prone to errors, and is problematic for reproducibility. The second option cannot describe all aspects of a computational experiment, such as the potentially complex logic of a stimulation protocol. Brian addresses these issues using runtime code generation. Scientists write code with simple and concise high-level descriptions, and Brian transforms them into efficient low-level code that can run interleaved with their code. We illustrate this with several challenging examples: a plastic model of the pyloric network, a closed-loop sensorimotor model, a programmatic exploration of a neuron model, and an auditory model with real-time input.
© 2019, Stimberg et al.

Entities:  

Keywords:  computational neuroscience; neuroscience; none; simulation; software

Mesh:

Year:  2019        PMID: 31429824      PMCID: PMC6786860          DOI: 10.7554/eLife.47314

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  55 in total

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5.  Automatic fitting of spiking neuron models to electrophysiological recordings.

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7.  Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS.

Authors:  Philipp Weidel; Mikael Djurfeldt; Renato C Duarte; Abigail Morrison
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8.  Impact of fast sodium channel inactivation on spike threshold dynamics and synaptic integration.

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9.  Equation-oriented specification of neural models for simulations.

Authors:  Marcel Stimberg; Dan F M Goodman; Victor Benichoux; Romain Brette
Journal:  Front Neuroinform       Date:  2014-02-04       Impact factor: 4.081

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  69 in total

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Authors:  András Ecker; Bence Bagi; Eszter Vértes; Orsolya Steinbach-Németh; Mária R Karlócai; Orsolya I Papp; István Miklós; Norbert Hájos; Tamás F Freund; Attila I Gulyás; Szabolcs Káli
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8.  Cortical oscillations support sampling-based computations in spiking neural networks.

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10.  Transcranial alternating current stimulation entrains alpha oscillations by preferential phase synchronization of fast-spiking cortical neurons to stimulation waveform.

Authors:  Wei A Huang; Iain M Stitt; Ehsan Negahbani; D J Passey; Sangtae Ahn; Marshall Davey; Moritz Dannhauer; Thien T Doan; Anna C Hoover; Angel V Peterchev; Susanne Radtke-Schuller; Flavio Fröhlich
Journal:  Nat Commun       Date:  2021-05-25       Impact factor: 14.919

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