| Literature DB >> 25628862 |
David P Padilla1, Lewis G Spurgin2, Eleanor A Fairfield2, Juan Carlos Illera3, David S Richardson2.
Abstract
Studying the population history and demography of organisms with important ecological roles can aid understanding of evolutionary processes at the community level and inform conservation. We screened genetic variation (mtDNA and microsatellite) across the populations of the southern grey shrike (Lanius meridionalis koenigi) in the Canary Islands, where it is an endemic subspecies and an important secondary seed disperser. We show that the Canarian subspecies is polyphyletic with L. meridionalis elegans from North Africa and that shrikes have colonized the Canary Islands from North Africa multiple times. Substantial differences in genetic diversity exist across islands, which are most likely the product of a combination of historical colonization events and recent bottlenecks. The Eastern Canary Islands had the highest overall levels of genetic diversity and have probably been most recently and/or frequently colonized from Africa. Recent or ongoing bottlenecks were detected in three of the islands and are consistent with anecdotal evidence of population declines due to human disturbance. These findings are troubling given the shrike's key ecological role in the Canary Islands, and further research is needed to understand the community-level consequences of declines in shrike populations. Finally, we found moderate genetic differentiation among populations, which largely reflected the shrike's bottleneck history; however, a significant pattern of isolation-by-distance indicated that some gene flow occurs between islands. This study is a useful first step toward understanding how secondary seed dispersal operates over broad spatial scales.Entities:
Keywords: Canary Islands; diplochory; genetic structure; microsatellites; mtDNA; phylogeography
Year: 2014 PMID: 25628862 PMCID: PMC4298432 DOI: 10.1002/ece3.1334
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1(A) Southern grey shrike (photo by José Juan Hernández); (B) Map of the Canary Islands showing the number (single digits) of southern grey shrikes caught per sampling site.
Mitochondrial DNA diversity (cytochrome b) of the southern grey shrike in the Canary Islands
| Population |
| Number of haplotypes (h) | Haplotype diversity (Hd ± SD) | Nucleotide diversity ( |
|---|---|---|---|---|
| Tenerife Teide | 15 | 2 | 0.476 ± 0.092 | 0.0006 ± 3.8−4 |
| Tenerife coast | 11 | 1 | – | – |
| Gran Canaria | 17 | 2 | 0.233 ± 0.126 | 0.0001 ± 5.2−4 |
| Fuerteventura | 26 | 9 | 0.833 ± 0.056 | 0.0027 ± 9.7−4 |
| Lanzarote | 16 | 5 | 0.714 ± 0.081 | 0.0024 ± 9.2−4 |
| La Graciosa | 21 | 2 | 0.526 ± 0.040 | 0.0013 ± 4.9−4 |
| Total | 106 | 8 | 0.815 ± 0.018 | 0.0022 ± 7.2−4 |
Figure 2Minimum spanning network based on mtDNA sequences (cytochrome b) showing relationships among the ten different haplotypes of Canary Island shrikes (colored) and how these are connected to haplotypes from shrikes from northern Africa (gray, white and black). Circle sizes are proportional to haplotype frequency. Lines represent one mutational change at one nucleotide site, and black dots represent missing haplotypes.
Pairwise FST values estimated with mtDNA sequences (below the diagonal) and microsatellite data (above the diagonal)
|
| TEID | TF | GC | FV | LZ | GRAC |
|---|---|---|---|---|---|---|
| TEID | – | 0.067 | 0.205 | 0.221 | 0.129 | 0.271 |
| TF | 0.603 | – | 0.179 | 0.201 | 0.119 | 0.195 |
| GC | 0.782 | 0.903 | – | 0.098 | 0.082 | 0.108 |
| FV | 0.096 | 0.352 | 0.583 | – | 0.080 | 0.057 |
| LZ | 0.262 | 0.521 | 0.526 | 0.098 | – | 0.056 |
| GRAC | 0.233 | 0.417 | 0.721 | 0.225 | 0.224 | – |
TEID, Tenerife Teide; TF, Tenerife coast; GC, Gran Canaria; FV, Fuerteventura; LZ, Lanzarote; GRAC, La Graciosa.
All pairwise comparisons were statistically significant (P < 0.05).
Results of tests for genetic bottlenecks in Canarian shrike populations, using microsatellite loci (see Fig.1 for sample sizes): M (Garza and Williamson 2001) and Wilcoxon tests for heterozygote excess (Piry et al. 1999). The Wilcoxon tests were carried out twice, assuming that the percentage of stepwise mutations (PSM) was 90 and 80, respectively. Values highlighted in bold are those indicative of a bottleneck (M < 0.68 for the Garza–William ratio and P ≤ 0.05 for the Wilcoxon tests)
| Population |
|
|
|
|
|---|---|---|---|---|
| Tenerife Teide | 26 | 0.23 | 0.19 | |
| Tenerife coast | 23 | 0.52 | 0.37 | |
| Gran Canaria | 30 | 0.77 | ||
| Fuerteventura | 31 | 0.82 | 0.37 | 0.32 |
| Lanzarote | 32 | 0.71 | ||
| La Graciosa | 22 | 0.70 | 0.68 | 0.47 |
Figure 3Average (mean ± SE) (A) heterozygosity and (B) allelic richness at eight microsatellite loci in Canarian shrike populations (GRA = La Graciosa, LZ = Lanzarote, FV = Fuerteventura, GC = Gran Canaria, TF = Tenerife coast, TEID = Tenerife Teide). Sample sizes for each population are given in Table3.
Figure 4Genetic structure in Canarian shrike populations. (A) Principal component analysis of all loci implemented in the Adegenet package in R (PC1 and PC2 plotted on x and y axes, respectively). Ellipses represent 95% confidence intervals. (B) Pairwise (microsatellite) genetic distance in relation to geographic distance between populations.