| Literature DB >> 35898424 |
Robin Leppitt1,2, Alea Rose1, Wayne A Houston3, Peter M Kyne1, Sam C Banks1, John C Z Woinarski1,2, Stephen T Garnett1,2.
Abstract
The delineation of subspecies is important in the evaluation and protection of biodiversity. Subspecies delineation is hampered by inconsistently applied criteria and a lack of agreement and shifting standards on how a subspecies should be defined. The Australian endemic Yellow Chat (Epthianura crocea) is split into three subspecies (E. c. crocea, E. c. tunneyi, and E. c. macgregori) based on minor plumage differences and geographical isolation. Both E. c. tunneyi (Endangered) and E. c. macgregori (Critically Endangered) are recognized under Australian legislation as threatened and are the subject of significant conservation effort. We used mitochondrial DNA to evaluate the phylogeny of the Yellow Chat and determine how much genetic variation is present in each of the three subspecies. We found no significant difference in the cytochrome b sequences (833 base pairs) of E. c. crocea and E. c. tunneyi, but approximately 0.70% or 5.83 bp difference between E. c macgregori and both E. c. crocea and E. c. tunneyi. This analysis supports the delineation of E. c. macgregori as a valid subspecies but does not support separation of E. c. crocea from E. c. tunneyi. We also found very low levels of genetic variation within the Yellow Chat, suggesting it may be vulnerable to environmental change. Our results cast doubt upon the geographic isolation of E. c. crocea from E. c. tunneyi, but more advanced genetic sequencing and a robust comparison of plumage are needed to fully resolve taxonomy.Entities:
Keywords: Meliphagidae; birds; genetic diversity; mtDNA; phylogeny; subspecies; taxonomy
Year: 2022 PMID: 35898424 PMCID: PMC9309078 DOI: 10.1002/ece3.9114
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 3.167
FIGURE 1Records of the three subspecies of Yellow Chat (Epthianura crocea) sourced from eBird and BirdData records (Birdlife Australia, 2020; eBird, 2021). Broad sampling sites for each subspecies are also shown
Genetic diversity statistics for each of three Yellow Chat subspecies and for the species as a whole over 833 bp cytochrome b mtDNA sequence
| Subspecies | Sample size ( | Haplotypes detected | Polymorphic sites | Haplotype diversity (h) | Nucleotide diversity ( |
|---|---|---|---|---|---|
|
| 8 | 4 | 3 | 0.25 | 0.00030 |
|
| 17 | 4 | 4 | 0.51 | 0.00069 |
|
| 18 | 3 | 2 | 0.54 | 0.00074 |
| Yellow Chat (all subspecies) | 43 | 11 | 9 | 0.73 | 0.00378 |
The average percentage pairwise difference of cytochrome b sequences (gray cells) and the average amount of pairwise substitutions (white cells) between the three Yellow Chat (Epthianura crocea) subspecies and the outgroup Gibberbird (Ashbyia lovensis)
|
|
|
|
| |
|---|---|---|---|---|
|
| 68.97 | 69.06 | 69.39 | |
|
| 8.28% | 0.07% | 0.42 | 5.75 |
|
| 8.29% | 0.05% | 0.03% | 5.83 |
|
| 8.33% | 0.69% | 0.70% | 0.07% |
FIGURE 2The maximum likelihood tree of three Yellow Chat (Epthianura crocea) subspecies (represented by each of the unique haplotypes for each subspecies) and the Gibberbird (Ashbyia lovensis) as an outgroup. The numbers on the branches indicate the bootstrap support values
Summary table of the analysis of molecular variance (AMOVA) both between and within three Yellow Chat subspecies (p = .001)
| Source |
| SS | MS | Est. var. | % |
|---|---|---|---|---|---|
| Between subspecies | 2 | 56.817 | 28.408 | 2.030 | 73% |
| Within subspecies | 40 | 29.858 | 0.746 | 0.746 | 27% |
| Total | 42 | 86.674 | 2.776 | 100% |