Literature DB >> 25605600

A mixed basis with off-center Gaussian functions for the calculation of the potential energy surfaces for π-stacking interactions: dimers of benzene and planar C₆.

Ersin Yurtsever1.   

Abstract

A practical mixed basis set was developed to facilitate accurate calculations of potential energy surfaces for π-stacking interactions. Correlation consistent basis sets (cc-PVXZ) were augmented by p-type Gaussian functions placed above and below the planes of C6 moieties. Møller-Plesset (MP2, SCS-MP2) and coupled cluster [CCSD(T)] calculations show that such generated basis sets provide an accurate description of π-stacking systems with favorable computation times compared to the standard augmented basis sets. The addition of these off-center functions eliminates the linear dependence of the augmented basis sets, which is one of the most encountered numerical problems during calculation of the oligomers of polyaromatic hydrocarbons (PAH). In this work, we present a comparative study of the general characteristics of the potential energy surfaces for the parallel stacked and T-shape conformations of benzene and planar C6 clusters, using a combination of cc-PVXZ and our optimized functions. We discuss properties, such as the depth and curvature of the potential functions, short and long distance behavior, and the frictional forces between two model monomers.

Entities:  

Year:  2015        PMID: 25605600     DOI: 10.1007/s00894-014-2558-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  12 in total

1.  Structure, energetics, and dynamics of the nucleic Acid base pairs: nonempirical ab initio calculations.

Authors:  P Hobza; J Sponer
Journal:  Chem Rev       Date:  1999-11-10       Impact factor: 60.622

2.  Noncovalent interactions: a challenge for experiment and theory.

Authors:  K Müller-Dethlefs; P Hobza
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

3.  The charge-transfer states in a stacked nucleobase dimer complex: a benchmark study.

Authors:  Adélia J A Aquino; Dana Nachtigallova; Pavel Hobza; Donald G Truhlar; Christof Hättig; Hans Lischka
Journal:  J Comput Chem       Date:  2010-11-29       Impact factor: 3.376

4.  Assessment of standard force field models against high-quality ab initio potential curves for prototypes of pi-pi, CH/pi, and SH/pi interactions.

Authors:  C David Sherrill; Bobby G Sumpter; Mutasem O Sinnokrot; Michael S Marshall; Edward G Hohenstein; Ross C Walker; Ian R Gould
Journal:  J Comput Chem       Date:  2009-11-15       Impact factor: 3.376

5.  Stacking interactions.

Authors:  Pavel Hobza
Journal:  Phys Chem Chem Phys       Date:  2008-04-14       Impact factor: 3.676

6.  Long-range hydrogen-bond structure in aqueous solutions and the vapor-water interface.

Authors:  Sheeba Jem Irudayam; Richard H Henchman
Journal:  J Chem Phys       Date:  2012-07-21       Impact factor: 3.488

7.  Carbohydrate-aromatic interactions.

Authors:  Juan Luis Asensio; Ana Ardá; Francisco Javier Cañada; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2012-06-15       Impact factor: 22.384

8.  A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu.

Authors:  Stefan Grimme; Jens Antony; Stephan Ehrlich; Helge Krieg
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

9.  Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.

Authors:  Mark A Ditzler; Michal Otyepka; Jirì Sponer; Nils G Walter
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

10.  Graphane and hydrogenated graphene.

Authors:  Martin Pumera; Colin Hong An Wong
Journal:  Chem Soc Rev       Date:  2013-07-21       Impact factor: 54.564

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