Literature DB >> 11749516

Structure, energetics, and dynamics of the nucleic Acid base pairs: nonempirical ab initio calculations.

P Hobza1, J Sponer.   

Abstract

Year:  1999        PMID： 11749516     DOI： 10.1021/cr9800255

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  97 in total

1.  Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)(2) B<-->A intermediate crystal structure.

Authors:  J Poner; J Florián; H L Ng; J E Poner; N Packová
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

2.  On the molecular discrimination between adenine and guanine by proteins.

Authors:  I Nobeli; R A Laskowski; W S Valdar; J M Thornton
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

3.  2-Pyridone and 3-oxo-1,2,6-thiadiazine-1,1-dioxide derivatives: a new class of hydrogen bond equivalents of uracil.

Authors:  Shun-ichi Kawahara; Tadafumi Uchimaru; Kazunari Taira
Journal:  J Comput Aided Mol Des       Date:  2003 May-Jun       Impact factor: 3.686

4.  Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.

Authors:  Ho-Leung Ng; Richard E Dickerson
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

5.  Base pair analogs in the gas phase.

Authors:  Joseph R Roscioli; David W Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-11       Impact factor: 11.205

6.  Role of wobble base pair geometry for codon degeneracy: purine-type bases at the anticodon wobble position.

Authors:  Gunajyoti Das; R H Duncan Lyngdoh
Journal:  J Mol Model       Date:  2012-03-08       Impact factor: 1.810

7.  Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis.

Authors:  Weina Wang; Homme W Hellinga; Lorena S Beese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

8.  N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.

Authors:  Christian Greve; Nicholas K Preketes; Rene Costard; Benjamin Koeppe; Henk Fidder; Erik T J Nibbering; Friedrich Temps; Shaul Mukamel; Thomas Elsaesser
Journal:  J Phys Chem A       Date:  2012-07-18       Impact factor: 2.781

9.  Electronic and molecular structure of M-DNA fragments.

Authors:  Yury V Rubin; Leonid F Belous; Capital A Cyrillicnatolij Capital A Cyrillic Yakuba
Journal:  J Mol Model       Date:  2010-07-18       Impact factor: 1.810

10.  The accuracy of quantum chemical methods for large noncovalent complexes.

Authors:  Robert Sedlak; Tomasz Janowski; Michal Pitoňák; Jan Rezáč; Peter Pulay; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006
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