Literature DB >> 21425279

The charge-transfer states in a stacked nucleobase dimer complex: a benchmark study.

Adélia J A Aquino1, Dana Nachtigallova, Pavel Hobza, Donald G Truhlar, Christof Hättig, Hans Lischka.   

Abstract

Electronic singlet excitations of stacked adenine-thymine (AT) and guanine-cytosine (GC) complexes have been investigated with respect to local excitation and charge-transfer (CT) characters. Potential energy curves for rigid displacement of the nucleobases have been computed to establish the distance dependence of the CT states. The second-order algebraic diagrammatic construction [ADC(2)] method served as reference approach for comparison to a selected set of density functionals used within the time-dependent density functional theory (TD-DFT). Particular attention was dedicated to the performance of the recently developed family of M06 functionals. The calculations for the stacked complexes show that at the ADC(2) level, the lowest CT state is S(6) for the AT and as S(4) for the GC pair. At the reference geometry, the actual charge transferred is found to be 0.73 e for AT. In case of GC, this amount is much smaller (0.17 e). With increasing separation of the two nucleobases, the CT state is strongly destabilized. The M06-2X version provides a relatively good reproduction of the ADC(2) results. It avoids the serious overstabilization and overcrowding of the spectrum found with the B3LYP functional. On the other hand, M06-HF destabilizes the CT state too strongly. TD-DFT/M06-2X calculations in solution (heptane, isoquinoline, and water) using the polarizable continuum model show a stabilization of the CT state and an increase in CT character with increasing polarity of the solvent.
Copyright © 2010 Wiley Periodicals, Inc.

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Year:  2010        PMID: 21425279     DOI: 10.1002/jcc.21702

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

1.  A mixed basis with off-center Gaussian functions for the calculation of the potential energy surfaces for π-stacking interactions: dimers of benzene and planar C₆.

Authors:  Ersin Yurtsever
Journal:  J Mol Model       Date:  2015-01-22       Impact factor: 1.810

2.  Photophysical properties of pyrrolocytosine, a cytosine fluorescent base analogue.

Authors:  Quynh L Nguyen; Vincent A Spata; Spiridoula Matsika
Journal:  Phys Chem Chem Phys       Date:  2016-07-27       Impact factor: 3.676

3.  Electronically excited states in poly(p-phenylenevinylene): vertical excitations and torsional potentials from high-level ab initio calculations.

Authors:  Aditya N Panda; Felix Plasser; Adelia J A Aquino; Irene Burghardt; Hans Lischka
Journal:  J Phys Chem A       Date:  2013-03-06       Impact factor: 2.781

4.  Electronic delocalization, charge transfer and hypochromism in the UV absorption spectrum of polyadenine unravelled by multiscale computations and quantitative wavefunction analysis.

Authors:  Juan J Nogueira; Felix Plasser; Leticia González
Journal:  Chem Sci       Date:  2017-06-13       Impact factor: 9.825

5.  Electron Holes in G-Quadruplexes: The Role of Adenine Ending Groups.

Authors:  Evangelos Balanikas; Lara Martinez-Fernandez; Gérard Baldacchino; Dimitra Markovitsi
Journal:  Int J Mol Sci       Date:  2021-12-14       Impact factor: 5.923

  5 in total

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