Literature DB >> 19242959

Assessment of standard force field models against high-quality ab initio potential curves for prototypes of pi-pi, CH/pi, and SH/pi interactions.

C David Sherrill1, Bobby G Sumpter, Mutasem O Sinnokrot, Michael S Marshall, Edward G Hohenstein, Ross C Walker, Ian R Gould.   

Abstract

Several popular force fields, namely, CHARMM, AMBER, OPLS-AA, and MM3, have been tested for their ability to reproduce highly accurate quantum mechanical potential energy curves for noncovalent interactions in the benzene dimer, the benzene-CH(4) complex, and the benzene-H(2)S complex. All of the force fields are semi-quantitatively correct, but none of them is consistently reliable quantitatively. Re-optimization of Lennard-Jones parameters and symmetry-adapted perturbation theory analysis for the benzene dimer suggests that better agreement cannot be expected unless more flexible functional forms (particularly for the electrostatic contributions) are employed for the empirical force fields. 2009 Wiley Periodicals, Inc.

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Year:  2009        PMID: 19242959     DOI: 10.1002/jcc.21226

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  14 in total

1.  The errors of our ways: taking account of error in computer-aided drug design to build confidence intervals for our next 25 years.

Authors:  Terry Richard Stouch
Journal:  J Comput Aided Mol Des       Date:  2012-01-14       Impact factor: 3.686

2.  Analysis of the interactions of sulfur-containing amino acids in membrane proteins.

Authors:  José C Gómez-Tamayo; Arnau Cordomí; Mireia Olivella; Eduardo Mayol; Daniel Fourmy; Leonardo Pardo
Journal:  Protein Sci       Date:  2016-06-08       Impact factor: 6.725

3.  An optimized charge penetration model for use with the AMOEBA force field.

Authors:  Joshua A Rackers; Qiantao Wang; Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren; Jay W Ponder
Journal:  Phys Chem Chem Phys       Date:  2016-12-21       Impact factor: 3.676

4.  A mixed basis with off-center Gaussian functions for the calculation of the potential energy surfaces for π-stacking interactions: dimers of benzene and planar C₆.

Authors:  Ersin Yurtsever
Journal:  J Mol Model       Date:  2015-01-22       Impact factor: 1.810

5.  Deep Neural Network Model to Predict the Electrostatic Parameters in the Polarizable Classical Drude Oscillator Force Field.

Authors:  Anmol Kumar; Poonam Pandey; Payal Chatterjee; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2022-02-11       Impact factor: 6.006

6.  Transition State Force Field for the Asymmetric Redox-Relay Heck Reaction.

Authors:  Anthony R Rosales; Sean P Ross; Paul Helquist; Per-Ola Norrby; Matthew S Sigman; Olaf Wiest
Journal:  J Am Chem Soc       Date:  2020-05-14       Impact factor: 15.419

7.  On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations.

Authors:  Leonid Pereyaslavets; Igor Kurnikov; Ganesh Kamath; Oleg Butin; Alexey Illarionov; Igor Leontyev; Michael Olevanov; Michael Levitt; Roger D Kornberg; Boris Fain
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-20       Impact factor: 11.205

8.  Quantum Mechanical Calculation of Noncovalent Interactions: A Large-Scale Evaluation of PMx, DFT, and SAPT Approaches.

Authors:  Amanda Li; Hari S Muddana; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2014-02-25       Impact factor: 6.006

9.  Steric "attraction": not by dispersion alone.

Authors:  Ganna Gryn'ova; Clémence Corminboeuf
Journal:  Beilstein J Org Chem       Date:  2018-06-19       Impact factor: 2.883

10.  Toward Predictive Molecular Dynamics Simulations of Asphaltenes in Toluene and Heptane.

Authors:  Artyom D Glova; Sergey V Larin; Victor M Nazarychev; Josè M Kenny; Alexey V Lyulin; Sergey V Lyulin
Journal:  ACS Omega       Date:  2019-11-12
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