Literature DB >> 25599534

Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology.

Andreas Heindl1, Sidra Nawaz1, Yinyin Yuan1.   

Abstract

The emergent field of digital pathology employing automated image analysis techniques is to revolutionize traditional pathology at the center of clinical diagnostics. Histological images provide important tumor features unavailable in molecular profiling or omics data- the spatial context of tumor and stromal cells at single-cell resolution. Methods to map the spatial and morphological patterns of cancer and normal cells can contribute to a more comprehensive understanding of the highly heterogeneous tumor microenvironment. This review focuses on methods that help expand our knowledge of intra-tumoral spatial heterogeneity of the tumor microenvironment and their potential synergies with molecular profiling technologies.

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Year:  2015        PMID: 25599534     DOI: 10.1038/labinvest.2014.155

Source DB:  PubMed          Journal:  Lab Invest        ISSN: 0023-6837            Impact factor:   5.662


  53 in total

1.  Systematic analysis of breast cancer morphology uncovers stromal features associated with survival.

Authors:  Andrew H Beck; Ankur R Sangoi; Samuel Leung; Robert J Marinelli; Torsten O Nielsen; Marc J van de Vijver; Robert B West; Matt van de Rijn; Daphne Koller
Journal:  Sci Transl Med       Date:  2011-11-09       Impact factor: 17.956

Review 2.  The detection and role of lymphatic and blood vessel invasion in predicting survival in patients with node negative operable primary colorectal cancer.

Authors:  Hester C van Wyk; Campbell S Roxburgh; Paul G Horgan; Alan F Foulis; Donald C McMillan
Journal:  Crit Rev Oncol Hematol       Date:  2013-11-21       Impact factor: 6.312

3.  Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

Authors:  Yinyin Yuan; Henrik Failmezger; Oscar M Rueda; H Raza Ali; Stefan Gräf; Suet-Feung Chin; Roland F Schwarz; Christina Curtis; Mark J Dunning; Helen Bardwell; Nicola Johnson; Sarah Doyle; Gulisa Turashvili; Elena Provenzano; Sam Aparicio; Carlos Caldas; Florian Markowetz
Journal:  Sci Transl Med       Date:  2012-10-24       Impact factor: 17.956

4.  Intratumoral T cells, recurrence, and survival in epithelial ovarian cancer.

Authors:  Lin Zhang; Jose R Conejo-Garcia; Dionyssios Katsaros; Phyllis A Gimotty; Marco Massobrio; Giorgia Regnani; Antonis Makrigiannakis; Heidi Gray; Katia Schlienger; Michael N Liebman; Stephen C Rubin; George Coukos
Journal:  N Engl J Med       Date:  2003-01-16       Impact factor: 91.245

5.  Improved computer-assisted analysis of the global lymphatic network in human cervical tissues.

Authors:  Cédric Balsat; Nicolas Signolle; Frédéric Goffin; Katty Delbecque; Benoit Plancoulaine; Philippe Sauthier; Vanessa Samouëlian; Aude Béliard; Carine Munaut; Jean-Michel Foidart; Silvia Blacher; Agnès Noël; Frédéric Kridelka
Journal:  Mod Pathol       Date:  2013-12-06       Impact factor: 7.842

6.  The E3 ligase Cbl-b and TAM receptors regulate cancer metastasis via natural killer cells.

Authors:  Magdalena Paolino; Axel Choidas; Stephanie Wallner; Blanka Pranjic; Iris Uribesalgo; Stefanie Loeser; Amanda M Jamieson; Wallace Y Langdon; Fumiyo Ikeda; Juan Pablo Fededa; Shane J Cronin; Roberto Nitsch; Carsten Schultz-Fademrecht; Jan Eickhoff; Sascha Menninger; Anke Unger; Robert Torka; Thomas Gruber; Reinhard Hinterleitner; Gottfried Baier; Dominik Wolf; Axel Ullrich; Bert M Klebl; Josef M Penninger
Journal:  Nature       Date:  2014-02-19       Impact factor: 49.962

7.  Identifying survival associated morphological features of triple negative breast cancer using multiple datasets.

Authors:  Chao Wang; Thierry Pécot; Debra L Zynger; Raghu Machiraju; Charles L Shapiro; Kun Huang
Journal:  J Am Med Inform Assoc       Date:  2013-04-12       Impact factor: 4.497

8.  Spatial organization of dendritic cells within tumor draining lymph nodes impacts clinical outcome in breast cancer patients.

Authors:  Andrew Y Chang; Nupur Bhattacharya; Jian Mu; A Francesca Setiadi; Valeria Carcamo-Cavazos; Gerald H Lee; Diana L Simons; Sina Yadegarynia; Kaveh Hemati; Adam Kapelner; Zheng Ming; David N Krag; Erich J Schwartz; Danny Z Chen; Peter P Lee
Journal:  J Transl Med       Date:  2013-10-02       Impact factor: 5.531

9.  Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Authors:  Jun Kong; Lee A D Cooper; Fusheng Wang; Jingjing Gao; George Teodoro; Lisa Scarpace; Tom Mikkelsen; Matthew J Schniederjan; Carlos S Moreno; Joel H Saltz; Daniel J Brat
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

10.  An original approach for quantification of blood vessels on the whole tumour section.

Authors:  Nga Tran Kim; Nicolas Elie; Benoît Plancoulaine; Paulette Herlin; Michel Coster
Journal:  Anal Cell Pathol       Date:  2003       Impact factor: 2.916

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  66 in total

1.  A metric and workflow for quality control in the analysis of heterogeneity in phenotypic profiles and screens.

Authors:  Albert Gough; Tong Ying Shun; D Lansing Taylor; Mark Schurdak
Journal:  Methods       Date:  2015-11-04       Impact factor: 3.608

2.  Evaluating optimal therapy robustness by virtual expansion of a sample population, with a case study in cancer immunotherapy.

Authors:  Syndi Barish; Michael F Ochs; Eduardo D Sontag; Jana L Gevertz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

3.  A methodology for comprehensive breast cancer Ki67 labeling index with intra-tumor heterogeneity appraisal based on hexagonal tiling of digital image analysis data.

Authors:  Benoit Plancoulaine; Aida Laurinaviciene; Paulette Herlin; Justinas Besusparis; Raimundas Meskauskas; Indra Baltrusaityte; Yasir Iqbal; Arvydas Laurinavicius
Journal:  Virchows Arch       Date:  2015-10-19       Impact factor: 4.064

4.  Cell-to-cell distances between tumor-infiltrating inflammatory cells have the potential to distinguish functionally active from suppressed inflammatory cells.

Authors:  S Nagl; M Haas; G Lahmer; M Büttner-Herold; G G Grabenbauer; R Fietkau; L V Distel
Journal:  Oncoimmunology       Date:  2016-01-13       Impact factor: 8.110

Review 5.  Clonal cooperativity in heterogenous cancers.

Authors:  Hengbo Zhou; Deepika Neelakantan; Heide L Ford
Journal:  Semin Cell Dev Biol       Date:  2016-08-28       Impact factor: 7.727

Review 6.  Spatial Heterogeneity in the Tumor Microenvironment.

Authors:  Yinyin Yuan
Journal:  Cold Spring Harb Perspect Med       Date:  2016-08-01       Impact factor: 6.915

7.  Correlation Analysis of Histopathology and Proteogenomics Data for Breast Cancer.

Authors:  Xiaohui Zhan; Jun Cheng; Zhi Huang; Zhi Han; Bryan Helm; Xiaowen Liu; Jie Zhang; Tian-Fu Wang; Dong Ni; Kun Huang
Journal:  Mol Cell Proteomics       Date:  2019-07-08       Impact factor: 5.911

Review 8.  Advances in the computational and molecular understanding of the prostate cancer cell nucleus.

Authors:  Neil M Carleton; George Lee; Anant Madabhushi; Robert W Veltri
Journal:  J Cell Biochem       Date:  2018-06-20       Impact factor: 4.429

9.  Diagnostic assessment of osteosarcoma chemoresistance based on Virtual Clinical Trials.

Authors:  K A Rejniak; M C Lloyd; D R Reed; M M Bui
Journal:  Med Hypotheses       Date:  2015-06-24       Impact factor: 1.538

10.  Leveraging the Imaging Transmit Pulse to Manipulate Phase-Change Nanodroplets for Contrast-Enhanced Ultrasound.

Authors:  Yiying I Zhu; Heechul Yoon; Andrew X Zhao; Stanislav Y Emelianov
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2019-01-25       Impact factor: 2.725

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