Literature DB >> 25593350

Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.

Chunlei Wang1, Xiaomei Dong1, Dan Jin1, Yusheng Zhao1, Shaojun Xie1, Xiaojie Li1, Xinjian He1, Zhaobo Lang1, Jinsheng Lai1, Jian-Kang Zhu1, Zhizhong Gong2.   

Abstract

Although researchers have established that DNA methylation and active demethylation are dynamically regulated in plant cells, the molecular mechanism for the regulation of active DNA demethylation is not well understood. By using an Arabidopsis (Arabidopsis thaliana) line expressing the Promoter RESPONSIVE TO DEHYDRATION 29A:LUCIFERASE (ProRD29A:LUC) and Promoter cauliflower mosaic virus 35S:NEOMYCIN PHOSPHOTRANSFERASE II (Pro35S:NPTII) transgenes, we isolated an mbd7 (for methyl-CpG-binding domain protein7) mutant. The mbd7 mutation causes an inactivation of the Pro35S:NPTII transgene but does not affect the expression of the ProRD29A:LUC transgene. The silencing of the Pro35S:NPTII reporter gene is associated with DNA hypermethylation of the reporter gene. MBD7 interacts physically with REPRESSOR OF SILENCING5/INCREASED DNA METHYLATION2, a protein in the small heat shock protein family. MBD7 prefers to target the genomic loci with high densities of DNA methylation around chromocenters. The Gypsy-type long terminal repeat retrotransposons mainly distributed around chromocenters are most affected by mbd7 in all transposons. Our results suggest that MBD7 is required for active DNA demethylation and antisilencing of the genomic loci with high densities of DNA methylation in Arabidopsis.
© 2015 American Society of Plant Biologists. All Rights Reserved.

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Year:  2015        PMID: 25593350      PMCID: PMC4348759          DOI: 10.1104/pp.114.252106

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  37 in total

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Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

Review 2.  Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Authors:  Jeremy R Haag; Craig S Pikaard
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-22       Impact factor: 94.444

3.  DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization.

Authors:  Assaf Zemach; Yan Li; Bess Wayburn; Hagit Ben-Meir; Vladimir Kiss; Yigal Avivi; Vyacheslav Kalchenko; Steven E Jacobsen; Gideon Grafi
Journal:  Plant Cell       Date:  2005-04-01       Impact factor: 11.277

Review 4.  Regulation and function of DNA methylation in plants and animals.

Authors:  Xin-Jian He; Taiping Chen; Jian-Kang Zhu
Journal:  Cell Res       Date:  2011-02-15       Impact factor: 25.617

5.  Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.

Authors:  A M Lindroth; X Cao; J P Jackson; D Zilberman; C M McCallum; S Henikoff; S E Jacobsen
Journal:  Science       Date:  2001-05-10       Impact factor: 47.728

6.  DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis.

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Journal:  Plant Cell       Date:  2010-07-16       Impact factor: 11.277

7.  Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.

Authors:  Assaf Zemach; Gideon Grafi
Journal:  Plant J       Date:  2003-06       Impact factor: 6.417

8.  Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.

Authors:  Weiqiang Qian; Daisuke Miki; Mingguang Lei; Xiaohong Zhu; Huiming Zhang; Yunhua Liu; Yan Li; Zhaobo Lang; Jing Wang; Kai Tang; Renyi Liu; Jian-Kang Zhu
Journal:  Mol Cell       Date:  2014-07-04       Impact factor: 17.970

9.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

10.  Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

Authors:  Felix Krueger; Simon R Andrews
Journal:  Bioinformatics       Date:  2011-04-14       Impact factor: 6.937

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  27 in total

1.  Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis.

Authors:  Wen-Feng Nie; Mingguang Lei; Mingxuan Zhang; Kai Tang; Huan Huang; Cuijun Zhang; Daisuke Miki; Pan Liu; Yu Yang; Xingang Wang; Heng Zhang; Zhaobo Lang; Na Liu; Xuechen Xu; Ramesh Yelagandula; Huiming Zhang; Zhidan Wang; Xiaoqiang Chai; Andrea Andreucci; Jing-Quan Yu; Frederic Berger; Rosa Lozano-Duran; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-30       Impact factor: 11.205

2.  Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit.

Authors:  Zhaobo Lang; Yihai Wang; Kai Tang; Dengguo Tang; Tatsiana Datsenka; Jingfei Cheng; Yijing Zhang; Avtar K Handa; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

3.  AtMBD4: A methylated DNA binding protein negatively regulates a subset of phosphate starvation genes.

Authors:  Adwaita Prasad Parida; Amrapali Sharma; Arun Kumar Sharma
Journal:  J Biosci       Date:  2019-03       Impact factor: 1.826

4.  METHIONINE ADENOSYLTRANSFERASE4 Mediates DNA and Histone Methylation.

Authors:  Jingjing Meng; Lishuan Wang; Jingyi Wang; Xiaowen Zhao; Jinkui Cheng; Wenxiang Yu; Dan Jin; Qing Li; Zhizhong Gong
Journal:  Plant Physiol       Date:  2018-03-23       Impact factor: 8.340

5.  METHIONINE SYNTHASE1 Is Involved in Chromatin Silencing by Maintaining DNA and Histone Methylation.

Authors:  Xiaojing Yan; Liang Ma; Hongying Pang; Ping Wang; Lei Liu; Yanxia Cheng; Jinkui Cheng; Yan Guo; Quanzi Li
Journal:  Plant Physiol       Date:  2019-07-22       Impact factor: 8.340

6.  The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.

Authors:  Dongming Li; Ana Marie S Palanca; So Youn Won; Lei Gao; Ying Feng; Ajay A Vashisht; Li Liu; Yuanyuan Zhao; Xigang Liu; Xiuyun Wu; Shaofang Li; Brandon Le; Yun Ju Kim; Guodong Yang; Shengben Li; Jinyuan Liu; James A Wohlschlegel; Hongwei Guo; Beixin Mo; Xuemei Chen; Julie A Law
Journal:  Elife       Date:  2017-04-28       Impact factor: 8.140

7.  Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis.

Authors:  Lishuan Wang; Chunlei Wang; Xinye Liu; Jinkui Cheng; Shaofang Li; Jian-Kang Zhu; Zhizhong Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-07       Impact factor: 11.205

8.  Genome-wide analysis of genes encoding MBD domain-containing proteins from tomato suggest their role in fruit development and abiotic stress responses.

Authors:  Adwaita Prasad Parida; Utkarsh Raghuvanshi; Amit Pareek; Vijendra Singh; Rahul Kumar; Arun Kumar Sharma
Journal:  Mol Biol Rep       Date:  2018-10-22       Impact factor: 2.316

9.  The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation.

Authors:  Jixiang Zhang; Shaojun Xie; Jinkui Cheng; Jinsheng Lai; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant Physiol       Date:  2016-04-25       Impact factor: 8.340

10.  Involvement of MEM1 in DNA demethylation in Arabidopsis.

Authors:  Yanke Lu; Jie Dai; Liu Yang; Yumei La; Shaoxia Zhou; Sheng Qiang; Qianqian Wang; Feng Tan; Yufeng Wu; Weiwen Kong; Honggui La
Journal:  Plant Mol Biol       Date:  2020-01-04       Impact factor: 4.076

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