Literature DB >> 25591928

GATA family members as inducers for cellular reprogramming to pluripotency.

Jian Shu1, Ke Zhang2, Minjie Zhang3, Anzhi Yao1, Sida Shao1, Fengxia Du4, Caiyun Yang4, Wenhan Chen1, Chen Wu1, Weifeng Yang5, Yingli Sun4, Hongkui Deng6.   

Abstract

Members of the GATA protein family play important roles in lineage specification and transdifferentiation. Previous reports show that some members of the GATA protein family can also induce pluripotency in somatic cells by substituting for Oct4, a key pluripotency-associated factor. However, the mechanism linking lineage-specifying cues and the activation of pluripotency remains elusive. Here, we report that all GATA family members can substitute for Oct4 to induce pluripotency. We found that all members of the GATA family could inhibit the overrepresented ectodermal-lineage genes, which is consistent with previous reports indicating that a balance of different lineage-specifying forces is important for the restoration of pluripotency. A conserved zinc-finger DNA-binding domain in the C-terminus is critical for the GATA family to induce pluripotency. Using RNA-seq and ChIP-seq, we determined that the pluripotency-related gene Sall4 is a direct target of GATA family members during reprogramming and serves as a bridge linking the lineage-specifying GATA family to the pluripotency circuit. Thus, the GATA family is the first protein family of which all members can function as inducers of the reprogramming process and can substitute for Oct4. Our results suggest that the role of GATA family in reprogramming has been underestimated and that the GATA family may serve as an important mediator of cell fate conversion.

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Year:  2015        PMID: 25591928      PMCID: PMC4650575          DOI: 10.1038/cr.2015.6

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  39 in total

1.  Reprogramming of human fibroblasts to pluripotency with lineage specifiers.

Authors:  Nuria Montserrat; Emmanuel Nivet; Ignacio Sancho-Martinez; Tomoaki Hishida; Sachin Kumar; Laia Miquel; Carme Cortina; Yuriko Hishida; Yun Xia; Concepcion Rodriguez Esteban; Juan Carlos Izpisua Belmonte
Journal:  Cell Stem Cell       Date:  2013-07-18       Impact factor: 24.633

2.  New balance in pluripotency: reprogramming with lineage specifiers.

Authors:  Uri Ben-David; Jonathan Nissenbaum; Nissim Benvenisty
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

3.  DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation.

Authors:  Yongheng Chen; Darren L Bates; Raja Dey; Po-Han Chen; Ana Carolina Dantas Machado; Ite A Laird-Offringa; Remo Rohs; Lin Chen
Journal:  Cell Rep       Date:  2012-11-08       Impact factor: 9.423

4.  Identifying ChIP-seq enrichment using MACS.

Authors:  Jianxing Feng; Tao Liu; Bo Qin; Yong Zhang; Xiaole Shirley Liu
Journal:  Nat Protoc       Date:  2012-08-30       Impact factor: 13.491

Review 5.  Chromatin dynamics during cellular reprogramming.

Authors:  Effie Apostolou; Konrad Hochedlinger
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

6.  Induction of pluripotency in mouse somatic cells with lineage specifiers.

Authors:  Jian Shu; Chen Wu; Yetao Wu; Zhiyuan Li; Sida Shao; Wenhui Zhao; Xing Tang; Huan Yang; Lijun Shen; Xiaohan Zuo; Weifeng Yang; Yan Shi; Xiaochun Chi; Hongquan Zhang; Ge Gao; Youmin Shu; Kehu Yuan; Weiwu He; Chao Tang; Yang Zhao; Hongkui Deng
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

7.  Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase.

Authors:  Yosef Buganim; Dina A Faddah; Albert W Cheng; Elena Itskovich; Styliani Markoulaki; Kibibi Ganz; Sandy L Klemm; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Cell       Date:  2012-09-14       Impact factor: 41.582

8.  Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.

Authors:  Zhigang Xue; Kevin Huang; Chaochao Cai; Lingbo Cai; Chun-yan Jiang; Yun Feng; Zhenshan Liu; Qiao Zeng; Liming Cheng; Yi E Sun; Jia-yin Liu; Steve Horvath; Guoping Fan
Journal:  Nature       Date:  2013-07-28       Impact factor: 49.962

9.  A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis.

Authors:  Elizabeth J Paik; Shaun Mahony; Richard M White; Emily N Price; Anthony Dibiase; Bilguujin Dorjsuren; Christian Mosimann; Alan J Davidson; David Gifford; Leonard I Zon
Journal:  Stem Cell Reports       Date:  2013-11-07       Impact factor: 7.765

Review 10.  Lineage specifiers: new players in the induction of pluripotency.

Authors:  Jian Shu; Hongkui Deng
Journal:  Genomics Proteomics Bioinformatics       Date:  2013-10-04       Impact factor: 7.691

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  24 in total

1.  Pluripotent stem cells induced from mouse neural stem cells and small intestinal epithelial cells by small molecule compounds.

Authors:  Junqing Ye; Jian Ge; Xu Zhang; Lin Cheng; Zhengyuan Zhang; Shan He; Yuping Wang; Hua Lin; Weifeng Yang; Junfang Liu; Yang Zhao; Hongkui Deng
Journal:  Cell Res       Date:  2015-12-25       Impact factor: 25.617

2.  GATA2 deficiency and human hematopoietic development modeled using induced pluripotent stem cells.

Authors:  Moonjung Jung; Stefan Cordes; Jizhong Zou; Shiqin J Yu; Xavi Guitart; So Gun Hong; Vinh Dang; Elaine Kang; Flavia S Donaires; Sergio A Hassan; Maher Albitar; Amy P Hsu; Steven M Holland; Dennis D Hickstein; Danielle Townsley; Cynthia E Dunbar; Thomas Winkler
Journal:  Blood Adv       Date:  2018-12-11

3.  The homeobox transcription factor MSX2 partially mediates the effects of bone morphogenetic protein 4 (BMP4) on somatic cell reprogramming.

Authors:  Lilong Lin; Lining Liang; Xiao Yang; Hao Sun; Yuan Li; Duanqing Pei; Hui Zheng
Journal:  J Biol Chem       Date:  2018-08-10       Impact factor: 5.157

Review 4.  Master regulators in development: Views from the Drosophila retinal determination and mammalian pluripotency gene networks.

Authors:  Trevor L Davis; Ilaria Rebay
Journal:  Dev Biol       Date:  2016-12-13       Impact factor: 3.582

5.  Permissive epigenomes endow reprogramming competence to transcriptional regulators.

Authors:  Kee-Pyo Kim; Jinmi Choi; Juyong Yoon; Jan M Bruder; Borami Shin; Jonghun Kim; Marcos J Arauzo-Bravo; Dong Han; Guangming Wu; Dong Wook Han; Johnny Kim; Patrick Cramer; Hans R Schöler
Journal:  Nat Chem Biol       Date:  2020-08-17       Impact factor: 15.040

Review 6.  Advances in RNA Viral Vector Technology to Reprogram Somatic Cells: The Paramyxovirus Wave.

Authors:  Brenna Sharp; Ramya Rallabandi; Patricia Devaux
Journal:  Mol Diagn Ther       Date:  2022-06-28       Impact factor: 4.476

Review 7.  Mouse models of adrenocortical tumors.

Authors:  Kaitlin J Basham; Holly A Hung; Antonio M Lerario; Gary D Hammer
Journal:  Mol Cell Endocrinol       Date:  2015-12-08       Impact factor: 4.102

8.  Forkhead box family transcription factors as versatile regulators for cellular reprogramming to pluripotency.

Authors:  Meijun Fu; Huan Chen; Zepo Cai; Yihang Yang; Ziyu Feng; Mengying Zeng; Lijun Chen; Yue Qin; Baomei Cai; Pinghui Zhu; Chunhua Zhou; Shengyong Yu; Jing Guo; Jing Liu; Shangtao Cao; Duanqing Pei
Journal:  Cell Regen       Date:  2021-07-02

9.  Paternal preconception phthalate exposure alters sperm methylome and embryonic programming.

Authors:  Oladele A Oluwayiose; Chelsea Marcho; Haotian Wu; Emily Houle; Stephen A Krawetz; Alexander Suvorov; Jesse Mager; J Richard Pilsner
Journal:  Environ Int       Date:  2021-06-10       Impact factor: 13.352

Review 10.  Biological importance of OCT transcription factors in reprogramming and development.

Authors:  Kee-Pyo Kim; Dong Wook Han; Johnny Kim; Hans R Schöler
Journal:  Exp Mol Med       Date:  2021-06-11       Impact factor: 8.718

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