Literature DB >> 24153299

Chromatin dynamics during cellular reprogramming.

Effie Apostolou1, Konrad Hochedlinger.   

Abstract

Induced pluripotency is a powerful tool to derive patient-specific stem cells. In addition, it provides a unique assay to study the interplay between transcription factors and chromatin structure. Here, we review the latest insights into chromatin dynamics that are inherent to induced pluripotency. Moreover, we compare and contrast these events with other physiological and pathological processes that involve changes in chromatin and cell state, including germ cell maturation and tumorigenesis. We propose that an integrated view of these seemingly diverse processes could provide mechanistic insights into cell fate transitions in general and might lead to new approaches in regenerative medicine and cancer treatment.

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Year:  2013        PMID: 24153299      PMCID: PMC4216318          DOI: 10.1038/nature12749

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  122 in total

1.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

2.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

3.  Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.

Authors:  Takafusa Hikichi; Ryo Matoba; Takashi Ikeda; Akira Watanabe; Takuya Yamamoto; Satoko Yoshitake; Miwa Tamura-Nakano; Takayuki Kimura; Masayoshi Kamon; Mari Shimura; Koichi Kawakami; Akihiko Okuda; Hitoshi Okochi; Takafumi Inoue; Atsushi Suzuki; Shinji Masui
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-02       Impact factor: 11.205

4.  Jmjd3 inhibits reprogramming by upregulating expression of INK4a/Arf and targeting PHF20 for ubiquitination.

Authors:  Wei Zhao; Qingtian Li; Stephen Ayers; Yifeng Gu; Zhong Shi; Qingyuan Zhu; Yidong Chen; Helen Y Wang; Rong-Fu Wang
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

5.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

6.  Enhanced reprogramming of Xist by induced upregulation of Tsix and Dnmt3a.

Authors:  Jeong Tae Do; Dong Wook Han; Luca Gentile; Inge Sobek-Klocke; Martin Stehling; Hans R Schöler
Journal:  Stem Cells       Date:  2008-08-28       Impact factor: 6.277

7.  Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.

Authors:  Cigall Kadoch; Diana C Hargreaves; Courtney Hodges; Laura Elias; Lena Ho; Jeff Ranish; Gerald R Crabtree
Journal:  Nat Genet       Date:  2013-05-05       Impact factor: 38.330

8.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

9.  X chromosome activity in mouse XX primordial germ cells.

Authors:  Susana M Chuva de Sousa Lopes; Katsuhiko Hayashi; Tanya C Shovlin; Will Mifsud; M Azim Surani; Anne McLaren
Journal:  PLoS Genet       Date:  2008-02       Impact factor: 5.917

10.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

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  176 in total

1.  Label-free DNA imaging in vivo with stimulated Raman scattering microscopy.

Authors:  Fa-Ke Lu; Srinjan Basu; Vivien Igras; Mai P Hoang; Minbiao Ji; Dan Fu; Gary R Holtom; Victor A Neel; Christian W Freudiger; David E Fisher; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

Review 2.  The nexus of chromatin regulation and intermediary metabolism.

Authors:  Philipp Gut; Eric Verdin
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

3.  Generation of CD44 gene-deficient mouse derived induced pluripotent stem cells: CD44 gene-deficient iPSCs.

Authors:  Zhenwei Song; Qianqian Ji; Haijing Zhao; Yu Nie; Zuyong He; Yaosheng Chen; Peiqing Cong
Journal:  In Vitro Cell Dev Biol Anim       Date:  2014-06-21       Impact factor: 2.416

Review 4.  Epigenetic regulation of stemness maintenance in the neurogenic niches.

Authors:  Raquel Montalbán-Loro; Ana Domingo-Muelas; Alexandra Bizy; Sacri R Ferrón
Journal:  World J Stem Cells       Date:  2015-05-26       Impact factor: 5.326

Review 5.  Concise review: hematopoietic stem cell aging and the prospects for rejuvenation.

Authors:  Martin Wahlestedt; Cornelis Jan Pronk; David Bryder
Journal:  Stem Cells Transl Med       Date:  2014-12-29       Impact factor: 6.940

6.  BNIP3L-dependent mitophagy accounts for mitochondrial clearance during 3 factors-induced somatic cell reprogramming.

Authors:  Ge Xiang; Liang Yang; Qi Long; Keshi Chen; Haite Tang; Yi Wu; Zihuang Liu; Yanshuang Zhou; Juntao Qi; Lingjun Zheng; Wenbo Liu; Zhongfu Ying; Weimin Fan; Hongyan Shi; Hongmei Li; Xiaobing Lin; Mi Gao; Jinglei Liu; Feixiang Bao; Linpeng Li; Lifan Duan; Min Li; Xingguo Liu
Journal:  Autophagy       Date:  2017-07-19       Impact factor: 16.016

Review 7.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

8.  Widespread Mitotic Bookmarking by Histone Marks and Transcription Factors in Pluripotent Stem Cells.

Authors:  Yiyuan Liu; Bobbie Pelham-Webb; Dafne Campigli Di Giammartino; Jiexi Li; Daleum Kim; Katsuhiro Kita; Nestor Saiz; Vidur Garg; Ashley Doane; Paraskevi Giannakakou; Anna-Katerina Hadjantonakis; Olivier Elemento; Effie Apostolou
Journal:  Cell Rep       Date:  2017-05-16       Impact factor: 9.423

Review 9.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

10.  KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks.

Authors:  Dafne Campigli Di Giammartino; Andreas Kloetgen; Alexander Polyzos; Yiyuan Liu; Daleum Kim; Dylan Murphy; Abderhman Abuhashem; Paola Cavaliere; Boaz Aronson; Veevek Shah; Noah Dephoure; Matthias Stadtfeld; Aristotelis Tsirigos; Effie Apostolou
Journal:  Nat Cell Biol       Date:  2019-09-23       Impact factor: 28.824

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