Literature DB >> 25585419

An improved joint optimization of multiple level set functions for the segmentation of overlapping cervical cells.

Gustavo Carneiro, Andrew P Bradley.   

Abstract

In this paper, we present an improved algorithm for the segmentation of cytoplasm and nuclei from clumps of overlapping cervical cells. This problem is notoriously difficult because of the degree of overlap among cells, the poor contrast of cell cytoplasm and the presence of mucus, blood, and inflammatory cells. Our methodology addresses these issues by utilizing a joint optimization of multiple level set functions, where each function represents a cell within a clump, that have both unary (intracell) and pairwise (intercell) constraints. The unary constraints are based on contour length, edge strength, and cell shape, while the pairwise constraint is computed based on the area of the overlapping regions. In this way, our methodology enables the analysis of nuclei and cytoplasm from both free-lying and overlapping cells. We provide a systematic evaluation of our methodology using a database of over 900 images generated by synthetically overlapping images of free-lying cervical cells, where the number of cells within a clump is varied from 2 to 10 and the overlap coefficient between pairs of cells from 0.1 to 0.5. This quantitative assessment demonstrates that our methodology can successfully segment clumps of up to 10 cells, provided the overlap between pairs of cells is <;0.2. Moreover, if the clump consists of three or fewer cells, then our methodology can successfully segment individual cells even when the overlap is ~0.5. We also evaluate our approach quantitatively and qualitatively on a set of 16 extended depth of field images, where we are able to segment a total of 645 cells, of which only ~10% are free-lying. Finally, we demonstrate that our method of cell nuclei segmentation is competitive when compared with the current state of the art.

Mesh:

Year:  2015        PMID: 25585419     DOI: 10.1109/TIP.2015.2389619

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  13 in total

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2.  Graph-based segmentation of abnormal nuclei in cervical cytology.

Authors:  Ling Zhang; Hui Kong; Shaoxiong Liu; Tianfu Wang; Siping Chen; Milan Sonka
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Authors:  Yawen Wu; Michael Cheng; Shuo Huang; Zongxiang Pei; Yingli Zuo; Jianxin Liu; Kai Yang; Qi Zhu; Jie Zhang; Honghai Hong; Daoqiang Zhang; Kun Huang; Liang Cheng; Wei Shao
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Review 4.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

5.  Cone Photoreceptor Cell Segmentation and Diameter Measurement on Adaptive Optics Images Using Circularly Constrained Active Contour Model.

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6.  Nucleus segmentation of cervical cytology images based on multi-scale fuzzy clustering algorithm.

Authors:  Jinjie Huang; Tao Wang; Dequan Zheng; Yongjun He
Journal:  Bioengineered       Date:  2020-12       Impact factor: 3.269

Review 7.  A Review of Computational Methods for Cervical Cells Segmentation and Abnormality Classification.

Authors:  Teresa Conceição; Cristiana Braga; Luís Rosado; Maria João M Vasconcelos
Journal:  Int J Mol Sci       Date:  2019-10-15       Impact factor: 5.923

8.  A contour property based approach to segment nuclei in cervical cytology images.

Authors:  Iram Tazim Hoque; Nabil Ibtehaz; Saumitra Chakravarty; M Saifur Rahman; M Sohel Rahman
Journal:  BMC Med Imaging       Date:  2021-01-28       Impact factor: 1.930

9.  Modified distance regularized level set evolution for brain ventricles segmentation.

Authors:  Thirumagal Jayaraman; Sravan Reddy M; Manjunatha Mahadevappa; Anup Sadhu; Pranab Kumar Dutta
Journal:  Vis Comput Ind Biomed Art       Date:  2020-12-07

10.  Large-scale localization of touching somas from 3D images using density-peak clustering.

Authors:  Shenghua Cheng; Tingwei Quan; Xiaomao Liu; Shaoqun Zeng
Journal:  BMC Bioinformatics       Date:  2016-09-15       Impact factor: 3.169

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