Literature DB >> 25574005

RNA. Prescribing splicing.

Roderic Guigó1, Juan Valcárcel2.   

Abstract

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Year:  2015        PMID： 25574005      PMCID： PMC4772402          DOI： 10.1126/science.aaa4864

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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  12 in total

1.  Deciphering the splicing code.

Authors:  Yoseph Barash; John A Calarco; Weijun Gao; Qun Pan; Xinchen Wang; Ofer Shai; Benjamin J Blencowe; Brendan J Frey
Journal:  Nature       Date:  2010-05-06       Impact factor: 49.962

2.  Nucleosome positioning as a determinant of exon recognition.

Authors:  Hagen Tilgner; Christoforos Nikolaou; Sonja Althammer; Michael Sammeth; Miguel Beato; Juan Valcárcel; Roderic Guigó
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

3.  Chromatin organization marks exon-intron structure.

Authors:  Schraga Schwartz; Eran Meshorer; Gil Ast
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

Review 4.  Splicing regulation: from a parts list of regulatory elements to an integrated splicing code.

Authors:  Zefeng Wang; Christopher B Burge
Journal:  RNA       Date:  2008-03-27       Impact factor: 4.942

5.  Histone modification levels are predictive for gene expression.

Authors:  Rosa Karlić; Ho-Ryun Chung; Julia Lasserre; Kristian Vlahovicek; Martin Vingron
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

Review 6.  Alternative splicing: a pivotal step between eukaryotic transcription and translation.

Authors:  Alberto R Kornblihtt; Ignacio E Schor; Mariano Alló; Gwendal Dujardin; Ezequiel Petrillo; Manuel J Muñoz
Journal:  Nat Rev Mol Cell Biol       Date:  2013-02-06       Impact factor: 94.444

Review 7.  Expansion of the eukaryotic proteome by alternative splicing.

Authors:  Timothy W Nilsen; Brenton R Graveley
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

8.  Regulation of alternative splicing by histone modifications.

Authors:  Reini F Luco; Qun Pan; Kaoru Tominaga; Benjamin J Blencowe; Olivia M Pereira-Smith; Tom Misteli
Journal:  Science       Date:  2010-02-04       Impact factor: 47.728

9.  RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Authors:  Hui Y Xiong; Babak Alipanahi; Leo J Lee; Hannes Bretschneider; Daniele Merico; Ryan K C Yuen; Yimin Hua; Serge Gueroussov; Hamed S Najafabadi; Timothy R Hughes; Quaid Morris; Yoseph Barash; Adrian R Krainer; Nebojsa Jojic; Stephen W Scherer; Benjamin J Blencowe; Brendan J Frey
Journal:  Science       Date:  2014-12-18       Impact factor: 47.728

10.  Modeling gene expression using chromatin features in various cellular contexts.

Authors:  Xianjun Dong; Melissa C Greven; Anshul Kundaje; Sarah Djebali; James B Brown; Chao Cheng; Thomas R Gingeras; Mark Gerstein; Roderic Guigó; Ewan Birney; Zhiping Weng
Journal:  Genome Biol       Date:  2012-06-13       Impact factor: 13.583
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  4 in total

1.  Predicting gene structure changes resulting from genetic variants via exon definition features.

Authors:  William H Majoros; Carson Holt; Michael S Campbell; Doreen Ware; Mark Yandell; Timothy E Reddy
Journal:  Bioinformatics       Date:  2018-11-01       Impact factor: 6.937

Review 2.  Deep Learning and Its Applications in Biomedicine.

Authors:  Chensi Cao; Feng Liu; Hai Tan; Deshou Song; Wenjie Shu; Weizhong Li; Yiming Zhou; Xiaochen Bo; Zhi Xie
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-03-06       Impact factor: 7.691

3.  A Common Cancer Risk-Associated Allele in the hTERT Locus Encodes a Dominant Negative Inhibitor of Telomerase.

Authors:  Anagha Killedar; Michael D Stutz; Alexander P Sobinoff; Christopher G Tomlinson; Tracy M Bryan; Jonathan Beesley; Georgia Chenevix-Trench; Roger R Reddel; Hilda A Pickett
Journal:  PLoS Genet       Date:  2015-06-08       Impact factor: 5.917

4.  Integrated genome and transcriptome sequencing identifies a noncoding mutation in the genome replication factor DONSON as the cause of microcephaly-micromelia syndrome.

Authors:  Gilad D Evrony; Dwight R Cordero; Jun Shen; Jennifer N Partlow; Timothy W Yu; Rachel E Rodin; R Sean Hill; Michael E Coulter; Anh-Thu N Lam; Divya Jayaraman; Dianne Gerrelli; Diana G Diaz; Chloe Santos; Victoria Morrison; Antonella Galli; Ulrich Tschulena; Stefan Wiemann; M Jocelyne Martel; Betty Spooner; Steven C Ryu; Princess C Elhosary; Jillian M Richardson; Danielle Tierney; Christopher A Robinson; Rajni Chibbar; Dana Diudea; Rebecca Folkerth; Sheldon Wiebe; A James Barkovich; Ganeshwaran H Mochida; James Irvine; Edmond G Lemire; Patricia Blakley; Christopher A Walsh
Journal:  Genome Res       Date:  2017-06-19       Impact factor: 9.043
  4 in total

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