Literature DB >> 23088327

Atomistic simulations of a multicomponent asymmetric lipid bilayer.

Anirban Polley1, Satyavani Vemparala, Madan Rao.   

Abstract

The cell membrane is inherently asymmetric and heterogeneous in its composition, a feature that is crucial for its function. Using atomistic molecular dynamics simulations, the physical properties of a 3-component asymmetric mixed lipid bilayer system comprising an unsaturated POPC (palmitoyloleoylphosphatidylcholine), a saturated PSM (palmitoylsphingomyelin), and cholesterol are investigated. Our simulations explore both the dynamics of coarsening following a quench from the mixed phase and the final phase-segregated regime obtained by equilibrating a fully segregated configuration. Following a quench, the membrane quickly enters a coarsening regime, where the initial stages of liquid ordered, l(o), domain formation are observed. These growing domains are found to be highly enriched in cholesterol and PSM. Consistent with this, the final phase-segregated regime contains large l(o) domains at equilibrium, enriched in cholesterol and PSM. Our simulations suggest that the cholesterol molecules may partition into these PSM-dominated regions in the ratio of 3:1 when compared to POPC-dominated regions. PSM molecules exhibit a measurable tilt and long-range tilt correlations within the l(o) domain as a consequence of the asymmetry of the bilayer, with implications to local membrane deformation and budding. Tagged particle diffusion for PSM and cholesterol molecules, which reflects spatial variations in the physical environment encountered by the tagged particle, is computed and compared with recent experimental results obtained from high-resolution microscopy.

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Year:  2012        PMID: 23088327     DOI: 10.1021/jp3032868

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Accurate In Silico Modeling of Asymmetric Bilayers Based on Biophysical Principles.

Authors:  Milka Doktorova; Harel Weinstein
Journal:  Biophys J       Date:  2018-09-15       Impact factor: 4.033

2.  Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

Authors:  David G Ackerman; Gerald W Feigenson
Journal:  J Phys Chem B       Date:  2015-01-22       Impact factor: 2.991

3.  How cholesterol could be drawn to the cytoplasmic leaf of the plasma membrane by phosphatidylethanolamine.

Authors:  Ha Giang; M Schick
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

4.  Elastic moduli of normal and cancer cell membranes revealed by molecular dynamics simulations.

Authors:  Hoang Linh Nguyen; Viet Hoang Man; Mai Suan Li; Philippe Derreumaux; Junmei Wang; Phuong H Nguyen
Journal:  Phys Chem Chem Phys       Date:  2022-03-09       Impact factor: 3.676

5.  Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins.

Authors:  Riya Raghupathy; Anupama Ambika Anilkumar; Anirban Polley; Parvinder Pal Singh; Mahipal Yadav; Charles Johnson; Sharad Suryawanshi; Varma Saikam; Sanghapal D Sawant; Aniruddha Panda; Zhongwu Guo; Ram A Vishwakarma; Madan Rao; Satyajit Mayor
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

Review 6.  Asymmetric lipid membranes: towards more realistic model systems.

Authors:  Drew Marquardt; Barbara Geier; Georg Pabst
Journal:  Membranes (Basel)       Date:  2015-05-06

7.  Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers.

Authors:  Heidi Koldsø; David Shorthouse; Jean Hélie; Mark S P Sansom
Journal:  PLoS Comput Biol       Date:  2014-10-23       Impact factor: 4.475

8.  A Coarse Grained Model for a Lipid Membrane with Physiological Composition and Leaflet Asymmetry.

Authors:  Satyan Sharma; Brian N Kim; Phillip J Stansfeld; Mark S P Sansom; Manfred Lindau
Journal:  PLoS One       Date:  2015-12-14       Impact factor: 3.752

  8 in total

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