Literature DB >> 31153187

Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture.

Asanga Bandara1, Afra Panahi1, George A Pantelopulos1, Tetsuro Nagai2, John E Straub1.   

Abstract

The separation of lipid mixtures into thermodynamically stable phase-separated domains is dependent on lipid composition, temperature, and system size. Using molecular dynamics simulations, the line tension between thermodynamically stable lipid domains formed from ternary mixtures of di-C16:0 PC:di-C18:2 PC:cholesterol at 40:40:20 mol. % ratio was investigated via two theoretical approaches. The line tension was found to be 3.1 ± 0.2 pN by capillary wave theory and 4.7 ± 3.7 pN by pressure tensor anisotropy approaches for coarse-grained models based on the Martini force field. Using an all-atom model of the lipid membrane based on the CHARMM36 force field, the line tension was found to be 3.6 ± 0.9 pN using capillary wave theory and 1.8 ± 2.2 pN using pressure anisotropy approaches. The discrepancy between estimates of the line tension based on capillary wave theory and pressure tensor anisotropy methods is discussed. Inclusion of protein in Martini membrane lipid mixtures was found to reduce the line tension by 25%-35% as calculated by the capillary wave theory approach. To further understand and predict the behavior of proteins in phase-separated membranes, we have formulated an analytical Flory-Huggins model and parameterized it against the simulation results. Taken together these results suggest a general role for proteins in reducing the thermodynamic cost associated with domain formation in lipid mixtures and quantifies the thermodynamic driving force promoting the association of proteins to domain interfaces.

Entities:  

Year:  2019        PMID: 31153187      PMCID: PMC6879351          DOI: 10.1063/1.5091450

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  75 in total

1.  Direct visual observation of thermal capillary waves.

Authors:  Dirk G A L Aarts; Matthias Schmidt; Henk N W Lekkerkerker
Journal:  Science       Date:  2004-05-07       Impact factor: 47.728

2.  Transmembrane helices can induce domain formation in crowded model membranes.

Authors:  Jan Domański; Siewert J Marrink; Lars V Schäfer
Journal:  Biochim Biophys Acta       Date:  2011-08-22

3.  Line active molecules promote inhomogeneous structures in membranes: theory, simulations and experiments.

Authors:  Benoit Palmieri; Tetsuya Yamamoto; Robert C Brewster; Samuel A Safran
Journal:  Adv Colloid Interface Sci       Date:  2014-02-15       Impact factor: 12.984

4.  Molecular Insight into the Line Tension of Bilayer Membranes Containing Hybrid Polyunsaturated Lipids.

Authors:  Carla M Rosetti; Guillermo G Montich; Claudio Pastorino
Journal:  J Phys Chem B       Date:  2017-02-10       Impact factor: 2.991

5.  Parameters for Martini sterols and hopanoids based on a virtual-site description.

Authors:  M N Melo; H I Ingólfsson; S J Marrink
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

6.  The MARTINI Coarse-Grained Force Field: Extension to Proteins.

Authors:  Luca Monticelli; Senthil K Kandasamy; Xavier Periole; Ronald G Larson; D Peter Tieleman; Siewert-Jan Marrink
Journal:  J Chem Theory Comput       Date:  2008-05       Impact factor: 6.006

7.  MDAnalysis: a toolkit for the analysis of molecular dynamics simulations.

Authors:  Naveen Michaud-Agrawal; Elizabeth J Denning; Thomas B Woolf; Oliver Beckstein
Journal:  J Comput Chem       Date:  2011-04-15       Impact factor: 3.376

8.  The molecular face of lipid rafts in model membranes.

Authors:  H Jelger Risselada; Siewert J Marrink
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

9.  CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field.

Authors:  Yifei Qi; Helgi I Ingólfsson; Xi Cheng; Jumin Lee; Siewert J Marrink; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2015-08-27       Impact factor: 6.006

10.  Toward optimized potential functions for protein-protein interactions in aqueous solutions: osmotic second virial coefficient calculations using the MARTINI coarse-grained force field.

Authors:  Austin C Stark; Casey T Andrews; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2013-09-10       Impact factor: 6.006

View more
  5 in total

1.  Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Authors:  Alessia Centi; Arghya Dutta; Sapun H Parekh; Tristan Bereau
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

2.  Interfacial hydration determines orientational and functional dimorphism of sterol-derived Raman tags in lipid-coated nanoparticles.

Authors:  Xingda An; Ayan Majumder; James McNeely; Jialing Yang; Taranee Puri; Zhiliang He; Taimeng Liang; John K Snyder; John E Straub; Björn M Reinhard
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-17       Impact factor: 11.205

3.  Spontaneous Membrane Nanodomain Formation in the Absence or Presence of the Neurotransmitter Serotonin.

Authors:  Anna Bochicchio; Astrid F Brandner; Oskar Engberg; Daniel Huster; Rainer A Böckmann
Journal:  Front Cell Dev Biol       Date:  2020-11-30

4.  Addressing the Excessive Aggregation of Membrane Proteins in the MARTINI Model.

Authors:  Ayan Majumder; John E Straub
Journal:  J Chem Theory Comput       Date:  2021-03-15       Impact factor: 6.006

Review 5.  Interleaflet Coupling of Lipid Nanodomains - Insights From in vitro Systems.

Authors:  Maria J Sarmento; Martin Hof; Radek Šachl
Journal:  Front Cell Dev Biol       Date:  2020-04-28
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.