Literature DB >> 25552988

Crystal structure of tetra-aqua-(5,5'-dimethyl-2,2'-bipyridyl-κ(2) N,N')iron(II) sulfate.

Yamine Belamri1, Fatima Setifi1, Bojana M Francuski2, Sladjana B Novaković2, Setifi Zouaoui3.   

Abstract

In the title compound, [Fe(C12H12N2)(H2O)4]SO4, the central Fe(II) ion is coordinated by two N atoms from the 5,5'-dimethyl-2,2'-bi-pyridine ligand and four water O atoms in a distorted octa-hedral geometry. The Fe-O coordination bond lengths vary from 2.080 (3) to 2.110 (3) Å, while the two Fe-N coordination bonds have practically identical lengths [2.175 (3) and 2.177 (3) Å]. The chelating N-Fe-N angle of 75.6 (1)° shows the largest deviation from an ideal octa-hedral geometry; the other coordination angles deviate from ideal values by 0.1 (1) to 9.1 (1)°. O-H⋯O hydrogen bonding between the four aqua ligands of the cationic complex and four O-atom acceptors of the anion leads to the formation of layers parallel to the ab plane. Neighbouring layers further inter-act by means of C-H⋯O and π-π inter-actions involving the laterally positioned bi-pyridine rings. The perpen-dicular distance between π-π inter-acting rings is 3.365 (2) Å, with a centroid-centroid distance of 3.702 (3) Å.

Entities:  

Keywords:  5,5′-dimethyl-2,2′-dipyrid­yl; bi­pyridine ligand; crystal structure; hydrogen bonding; sulfate; tetra­aqua­iron(II) complex; π–π inter­actions

Year:  2014        PMID: 25552988      PMCID: PMC4257445          DOI: 10.1107/S1600536814024982

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical context

Coordination compounds containing polynitrile anions as ligands are of current inter­est for their magnetic properties and their rich architectures and topologies (Setifi et al., 2003 ▶; Gaamoune et al., 2010 ▶; Váhovská & Potočňák, 2012 ▶; Setifi, Setifi et al., 2013 ▶; Setifi, Domasevitsch et al., 2013 ▶; Potočňák et al., 2014 ▶). Given the crucial role of these anionic ligands, we are inter­ested in using them in combination with other chelating or bridging neutral co-ligands to explore their structural and electronic characteristics in the large field of mol­ecular materials exhibiting the spin crossover (SCO) phenomenon. In an attempt to prepare such a complex, we obtained the title compound, [Fe(dmbpy)(H2O)4]SO4, (I), where dmbpy is 5,5′-dimethyl-2,2′-bipyridyl. The crystal structures of several complexes with general formula [M(bpy)(H2O)4]2+ comprising bipyridine derivatives as ligands have been reported previously (Boonlue et al., 2012 ▶; Harvey et al., 1999 ▶; Kwak et al., 2007 ▶; Suarez et al., 2013 ▶; Xiao et al., 2003 ▶; Yang, 2009 ▶; Yu et al., 2007 ▶; Zhang et al., 2008 ▶; Zhao & Bai, 2009 ▶). This is the first complex of this type with FeII as the central ion.

Structural commentary

A mol­ecular view of complex (I), together with the atom-numbering scheme is given in Fig. 1 ▶. The crystal structure of (I) consists of the cationic complex [Fe(dmbpy)(H2O)4]2+ and a free [SO4]2− counter-ion. The FeII atom is in a distorted octa­hedral coordination environment and the equatorial plane of the octa­hedron is formed by a pair of nitro­gen donors from the 5,5′-dimethyl-2,2′-bipyridyl ligand and two mol­ecules of water, while the axial sites are occupied by two other water mol­ecules. The equatorial donor atoms are nearly coplanar (r.m.s. deviation = 0.0062 Å), while the deviation of the Fe atom from the least-squares plane is somewhat larger [0.021 (2) Å]. The bi­pyridine chelating angle N1—FeN2 of 75.6 (1)° shows the most significant deviation from an ideal octa­hedral geometry. The other angular distortions from an ideal octa­hedral geometry are in the range 0.1 (1) to 9.1 (1)°. The S—O bond lengths [1.466 (3)–1.480 (3) Å] and O—S—O angles [108.8 (2)–109.9 (2)°] indicate a nearly ideal tetra­hedral geometry for the anion.
Figure 1

The mol­ecular structure of (I), with atom labels and 50% probability displacement ellipsoids for non-H atoms. Hydrogen bonds are indicated by dashed lines.

Supra­molecular features

Within the crystal packing, the charged components are connected by an extensive hydrogen-bonding network (Table 1 ▶). Each of the [Fe(dmbpy)(H2O)4]2+ cations engages all four coordinating water mol­ecules in hydrogen bonding to four [SO4]2− anions (Fig. 2 ▶ a). The anions surrounding the cationic unit are positioned at similar Fe⋯S distance of 4.9 Å. On the other hand, each of the [SO4]2− anions appears surrounded with four cationic units, where its four O atoms engage as acceptors in bifurcated O—H⋯O hydrogen bonds towards neighbouring cations (Fig. 2 ▶ a). Such a mutual arrangement leads to the formation of a two-dimensional hydrogen-bonded network parallel to the ab plane (Fig. 2 ▶ b). Laterally arranged aromatic rings of the 5,5′-dimethyl-2,2′-bi­pyridine ligand in neighbouring layers inter­act by means of weak C—H⋯O and π–π inter­actions, forming the three-dimensional crystal packing (Table 1 ▶ and Fig. 3 ▶). The centroid–centroid distance for the latter inter­action is 3.702 (3) Å.
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O5H1O5O4i 0.831.922.734(4)165
O5H2O5O2ii 0.961.942.794(4)147
O6H1O6O10.941.902.820(4)167
O6H2O6O3iii 0.831.952.765(4)165
O7H1O7O4ii 0.831.892.722(4)175
O7H2O7O20.821.892.697(4)167
O8H1O8O1iii 0.771.952.719(4)175
O8H2O8O3i 0.891.912.792(5)174
C4H4O4iv 0.932.543.232(5)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 2

(a) O—H⋯O inter­actions (dashed lines) connect the cations and anions into layers parallel to the ab plane. (b) View of a single layer down the a axis.

Figure 3

(a) The bipyridine rings from neighbouring layers inter­act via C—H⋯O and π–π inter­actions. (b) Orthogonal projection of the central fragment.

Synthesis and crystallization

The title compound, (I), was synthesized hydro­thermally from a mixture of iron(II) sulfate hepta­hydrate (28 mg, 0.1 mmol), 5,5′-dimethyl-2,2′-bipyridyl (18 mg, 0.1 mmol) and potassium tri­cyano­methanide KC(CN)3 (26 mg, 0.2 mmol) in waterethanol (4:1 v/v, 20 ml). The mixture was transferred to a Teflon-lined autoclave and heated at 410 K for 3 d. The autoclave was then allowed to cool to ambient temperature. Red crystals of (I) were collected by filtration, washed with water and dried in air (yield 35%).

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 2 ▶. H atoms bonded to C atoms were placed at geometrically calculated positions and refined using a riding model. C—H distances were fixed at 0.93 and 0.96 Å from aromatic and methyl C atoms, respectively. The U iso(H) values were equal to 1.2 and 1.5 times U eq of the corresponding C(sp 2) and C(sp 3) atoms. The H atoms of the four water mol­ecules were initially located in a difference Fourier map. During the refinement, these H atoms were allowed to ride on their parent O atoms and also to rotate about the corresponding Fe—O bonds. The U iso(H) values were set equal to 1.2 times U eq of the parent O atom. The reflections (100) and (002) were excluded from the refinement because they were nearly completely obscured by the beamstop.
Table 2

Experimental details

Crystal data
Chemical formula[Fe(C12H12N2)(H2O)4]SO4
M r 408.21
Crystal system, space groupMonoclinic, P21/c
Temperature (K)293
a, b, c ()9.5790(7), 9.6190(9), 18.5500(12)
()101.527(5)
V (3)1674.7(2)
Z 4
Radiation typeMo K
(mm1)1.07
Crystal size (mm)0.28 0.14 0.09
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2009)
T min, T max 0.792, 0.881
No. of measured, independent and observed [I > 2(I)] reflections14477, 4868, 3305
R int 0.117
(sin /)max (1)0.706
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.065, 0.196, 1.08
No. of reflections4867
No. of parameters223
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.84, 1.33

Computer programs: APEX2 and SAINT (Bruker, 2009 ▶), SHELXS97 (Sheldrick, 2008 ▶), SHELXL2014 (Sheldrick, 2008 ▶), ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814024982/vn2087sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814024982/vn2087Isup2.hkl CCDC reference: 1034106 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Fe(C12H12N2)(H2O)4]SO4F(000) = 848
Mr = 408.21Dx = 1.619 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4857 reflections
a = 9.5790 (7) Åθ = 2.2–29.9°
b = 9.6190 (9) ŵ = 1.07 mm1
c = 18.5500 (12) ÅT = 293 K
β = 101.527 (5)°Block, red
V = 1674.7 (2) Å30.28 × 0.14 × 0.09 mm
Z = 4
Bruker APEXII CCD diffractometer4868 independent reflections
Radiation source: fine-focus sealed tube3305 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.117
ω–2θ scansθmax = 30.1°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→13
Tmin = 0.792, Tmax = 0.881k = −13→13
14477 measured reflectionsl = −26→26
Refinement on F2223 parameters
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.065w = 1/[σ2(Fo2) + (0.0821P)2 + 2.0315P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.196(Δ/σ)max = 0.002
S = 1.08Δρmax = 0.84 e Å3
4867 reflectionsΔρmin = −1.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Fe10.77171 (5)0.13308 (6)0.80535 (3)0.02534 (17)
S10.75114 (9)−0.36313 (10)0.75262 (5)0.0251 (2)
O30.6693 (3)−0.4269 (3)0.80282 (17)0.0376 (7)
O10.6620 (3)−0.2600 (3)0.70522 (17)0.0364 (7)
O20.8783 (3)−0.2931 (3)0.79546 (16)0.0338 (6)
O40.7980 (3)−0.4722 (3)0.70641 (16)0.0347 (6)
O50.8418 (3)0.2477 (3)0.72229 (16)0.0361 (7)
H1O50.81290.32960.71710.043*
H2O50.91940.20650.70430.043*
O60.6213 (3)0.0261 (3)0.72705 (17)0.0399 (7)
H1O60.6389−0.06520.71300.048*
H2O60.53780.05560.71950.048*
O70.9191 (3)−0.0166 (3)0.7871 (2)0.0489 (9)
H1O71.0046−0.00160.78630.059*
H2O70.8929−0.09810.78790.059*
O80.6224 (3)0.2876 (4)0.8109 (2)0.0619 (11)
H1O80.54220.27010.80530.074*
H2O80.63330.37930.81070.074*
N10.7224 (4)0.0244 (4)0.90015 (19)0.0340 (8)
N20.9173 (4)0.2218 (4)0.89908 (19)0.0337 (8)
C10.6251 (5)−0.0763 (5)0.8969 (3)0.0390 (10)
H10.5747−0.10280.85080.047*
C20.5945 (5)−0.1437 (5)0.9581 (3)0.0424 (10)
C30.6691 (6)−0.0975 (5)1.0262 (3)0.0452 (11)
H30.6497−0.13621.06910.054*
C40.7709 (5)0.0043 (5)1.0307 (2)0.0412 (10)
H40.82190.03271.07630.049*
C50.7973 (4)0.0650 (5)0.9666 (2)0.0341 (9)
C60.9054 (4)0.1741 (4)0.9658 (2)0.0316 (8)
C70.9931 (5)0.2257 (5)1.0288 (2)0.0440 (11)
H70.98450.19261.07480.053*
C81.0931 (5)0.3265 (5)1.0230 (3)0.0436 (11)
H81.15120.36171.06530.052*
C91.1071 (5)0.3750 (5)0.9549 (3)0.0411 (10)
C101.0156 (5)0.3184 (5)0.8947 (2)0.0381 (9)
H101.02310.34960.84820.046*
C110.4852 (6)−0.2566 (6)0.9492 (3)0.0594 (14)
H11A0.3987−0.22430.91840.089*
H11B0.4670−0.28170.99660.089*
H11C0.5198−0.33630.92700.089*
C121.2165 (5)0.4814 (6)0.9444 (3)0.0553 (13)
H12A1.29190.43660.92610.083*
H12B1.25480.52490.99070.083*
H12C1.17260.55040.90990.083*
U11U22U33U12U13U23
Fe10.0228 (3)0.0200 (3)0.0332 (3)0.0001 (2)0.00542 (19)0.0011 (2)
S10.0219 (4)0.0171 (4)0.0374 (5)0.0005 (3)0.0084 (3)0.0000 (4)
O30.0387 (16)0.0309 (16)0.0461 (17)−0.0077 (13)0.0152 (13)0.0018 (13)
O10.0323 (15)0.0262 (15)0.0500 (17)0.0075 (12)0.0067 (12)0.0064 (13)
O20.0223 (12)0.0289 (16)0.0499 (17)−0.0067 (11)0.0065 (11)−0.0046 (13)
O40.0371 (15)0.0236 (14)0.0455 (16)0.0052 (12)0.0135 (12)−0.0051 (12)
O50.0361 (15)0.0212 (14)0.0536 (18)−0.0039 (12)0.0151 (13)0.0065 (13)
O60.0266 (14)0.0299 (16)0.0601 (19)−0.0038 (12)0.0013 (13)−0.0091 (15)
O70.0286 (15)0.0234 (15)0.098 (3)0.0025 (12)0.0207 (17)0.0004 (17)
O80.0270 (16)0.0275 (17)0.134 (4)0.0013 (13)0.022 (2)0.000 (2)
N10.0345 (17)0.0336 (19)0.0351 (18)0.0003 (15)0.0102 (14)0.0042 (15)
N20.0352 (18)0.0307 (18)0.0336 (17)−0.0043 (14)0.0033 (14)−0.0016 (14)
C10.039 (2)0.036 (2)0.042 (2)−0.0060 (19)0.0111 (18)0.0020 (19)
C20.045 (2)0.035 (2)0.051 (3)0.001 (2)0.017 (2)0.009 (2)
C30.059 (3)0.042 (3)0.040 (2)0.002 (2)0.024 (2)0.012 (2)
C40.050 (3)0.043 (3)0.033 (2)0.003 (2)0.0133 (19)0.0032 (19)
C50.037 (2)0.032 (2)0.034 (2)0.0064 (17)0.0093 (16)0.0015 (17)
C60.0318 (19)0.030 (2)0.034 (2)0.0048 (16)0.0078 (16)0.0014 (16)
C70.049 (3)0.047 (3)0.034 (2)0.002 (2)0.0034 (19)−0.003 (2)
C80.044 (2)0.040 (3)0.044 (3)−0.005 (2)0.0012 (19)−0.012 (2)
C90.040 (2)0.035 (2)0.047 (3)−0.0016 (19)0.0050 (18)−0.005 (2)
C100.040 (2)0.036 (2)0.038 (2)−0.0048 (19)0.0059 (17)0.0020 (19)
C110.061 (3)0.050 (3)0.073 (4)−0.006 (3)0.028 (3)0.014 (3)
C120.042 (3)0.051 (3)0.069 (3)−0.017 (2)0.003 (2)−0.007 (3)
Fe1—O82.080 (3)C1—H10.9300
Fe1—O72.091 (3)C2—C31.394 (7)
Fe1—O62.099 (3)C2—C111.494 (7)
Fe1—O52.110 (3)C3—C41.373 (7)
Fe1—N22.175 (3)C3—H30.9300
Fe1—N12.177 (3)C4—C51.392 (6)
S1—O31.466 (3)C4—H40.9300
S1—O21.477 (3)C5—C61.477 (6)
S1—O11.479 (3)C6—C71.388 (6)
S1—O41.480 (3)C7—C81.382 (7)
O5—H1O50.8346C7—H70.9300
O5—H2O50.9588C8—C91.379 (7)
O6—H1O60.9409C8—H80.9300
O6—H2O60.8339C9—C101.385 (6)
O7—H1O70.8346C9—C121.504 (7)
O7—H2O70.8248C10—H100.9300
O8—H1O80.7727C11—H11A0.9600
O8—H2O80.8889C11—H11B0.9600
N1—C11.337 (6)C11—H11C0.9600
N1—C51.354 (5)C12—H12A0.9600
N2—C101.336 (5)C12—H12B0.9600
N2—C61.345 (5)C12—H12C0.9600
C1—C21.389 (6)
O8—Fe1—O7173.50 (16)C2—C1—H1117.9
O8—Fe1—O690.06 (14)C1—C2—C3116.0 (4)
O7—Fe1—O686.71 (13)C1—C2—C11120.5 (5)
O8—Fe1—O589.18 (14)C3—C2—C11123.6 (4)
O7—Fe1—O585.26 (13)C4—C3—C2120.7 (4)
O6—Fe1—O591.46 (12)C4—C3—H3119.6
O8—Fe1—N290.98 (15)C2—C3—H3119.6
O7—Fe1—N293.10 (14)C3—C4—C5119.7 (4)
O6—Fe1—N2170.92 (13)C3—C4—H4120.1
O5—Fe1—N297.58 (13)C5—C4—H4120.1
O8—Fe1—N192.32 (15)N1—C5—C4120.2 (4)
O7—Fe1—N193.60 (14)N1—C5—C6116.1 (4)
O6—Fe1—N195.39 (13)C4—C5—C6123.7 (4)
O5—Fe1—N1172.99 (13)N2—C6—C7120.3 (4)
N2—Fe1—N175.55 (14)N2—C6—C5116.1 (4)
O3—S1—O2109.72 (18)C7—C6—C5123.6 (4)
O3—S1—O1109.88 (18)C8—C7—C6119.8 (4)
O2—S1—O1109.25 (18)C8—C7—H7120.1
O3—S1—O4109.51 (18)C6—C7—H7120.1
O2—S1—O4108.76 (17)C9—C8—C7120.3 (4)
O1—S1—O4109.70 (18)C9—C8—H8119.8
Fe1—O5—H1O5115.4C7—C8—H8119.8
Fe1—O5—H2O5114.8C8—C9—C10116.3 (4)
H1O5—O5—H2O5127.9C8—C9—C12123.1 (4)
Fe1—O6—H1O6120.9C10—C9—C12120.6 (4)
Fe1—O6—H2O6116.9N2—C10—C9124.4 (4)
H1O6—O6—H2O6119.3N2—C10—H10117.8
Fe1—O7—H1O7125.5C9—C10—H10117.8
Fe1—O7—H2O7115.7C2—C11—H11A109.5
H1O7—O7—H2O7118.0C2—C11—H11B109.5
Fe1—O8—H1O8120.9H11A—C11—H11B109.5
Fe1—O8—H2O8128.8C2—C11—H11C109.5
H1O8—O8—H2O8109.3H11A—C11—H11C109.5
C1—N1—C5119.2 (4)H11B—C11—H11C109.5
C1—N1—Fe1125.0 (3)C9—C12—H12A109.5
C5—N1—Fe1115.8 (3)C9—C12—H12B109.5
C10—N2—C6118.9 (4)H12A—C12—H12B109.5
C10—N2—Fe1124.9 (3)C9—C12—H12C109.5
C6—N2—Fe1116.3 (3)H12A—C12—H12C109.5
N1—C1—C2124.1 (4)H12B—C12—H12C109.5
N1—C1—H1117.9
D—H···AD—HH···AD···AD—H···A
O5—H1O5···O4i0.831.922.734 (4)165
O5—H2O5···O2ii0.961.942.794 (4)147
O6—H1O6···O10.941.902.820 (4)167
O6—H2O6···O3iii0.831.952.765 (4)165
O7—H1O7···O4ii0.831.892.722 (4)175
O7—H2O7···O20.821.892.697 (4)167
O8—H1O8···O1iii0.771.952.719 (4)175
O8—H2O8···O3i0.891.912.792 (5)174
C4—H4···O4iv0.932.543.232 (5)132
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

8.  Tetra-aqua-(2,2'-bipyridine-κN,N')manganese(II) di-μ-aqua-bis-[aqua-(2,2'-bipyridine-κN,N')(5-sulfonatoisophthalato-κO)manganate(II)] tetra-hydrate.

Authors:  Bing-Yu Zhang; Jing-Jing Nie; Duan-Jun Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

9.  Tris(5,6-dimethyl-1,10-phenanthroline-κ(2) N,N')iron(II) bis-(tricyano-methanide).

Authors:  Lucia Váhovská; Ivan Potočňák
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24

10.  Tris(1,10-phenanthroline-κ(2) N,N')iron(II) bis-(1,1,3,3-tetra-cyano-2-eth-oxy-propenide) hemihydrate.

Authors:  Zouaoui Setifi; Fatima Setifi; Seik Weng Ng; Abdelghani Oudahmane; Malika El-Ghozzi; Daniel Avignant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05
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  2 in total

1.  Crystal structure of tetra-aqua-[2-(pyridin-2-yl)-1H-imidazole-κ(2) N (2),N (3)]iron(II) sulfate.

Authors:  Zouaoui Setifi; Fatima Setifi; Bojana M Francuski; Sladjana B Novaković; Hocine Merazig
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-03-11

Review 2.  The Early Years of 2,2'-Bipyridine-A Ligand in Its Own Lifetime.

Authors:  Edwin C Constable; Catherine E Housecroft
Journal:  Molecules       Date:  2019-10-31       Impact factor: 4.411

  2 in total

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