Literature DB >> 26029386

Crystal structure of tetra-aqua-[2-(pyridin-2-yl)-1H-imidazole-κ(2) N (2),N (3)]iron(II) sulfate.

Zouaoui Setifi1, Fatima Setifi2, Bojana M Francuski3, Sladjana B Novaković3, Hocine Merazig4.   

Abstract

In the title compound, [Fe(C8n class="Species">H7N3)(H2O)4]SO4, the central Fe(II) ion is octa-hedrally coordinated by two N atoms from the bidentate 2-(pyridin-2-yl)-1H-imidazole ligand and by four O atoms of the aqua ligands. The largest deviation from the ideal octa-hedral geometry is reflected by the small N-Fe-N bite angle of 76.0 (1)°. The Fe-N coordination bonds have markedly different lengths [2.1361 (17) and 2.243 (2) Å], with the shorter one to the pyrimidine N atom. The four Fe-O coordination bond lengths vary from 2.1191 (18) to 2.1340 (17) Å. In the crystal, the cations and anions are arranged by means of medium-strength O-H⋯O hydrogen bonds into layers parallel to the ab plane. Neighbouring layers further inter-connect by N-H⋯O hydrogen bonds involving the imidazole fragment as donor group to one sulfate O atom as an acceptor. The resulting three-dimensional network is consolidated by C-H⋯O, C-H⋯π and π-π inter-actions.

Entities:  

Keywords:  2-(pyridin-2-yl)-1H-imidazole; C—H⋯π inter­actions; crystal structure; hydrogen bonding; iron(II) complex; π–π inter­actions

Year:  2015        PMID: 26029386      PMCID: PMC4438855          DOI: 10.1107/S2056989015004417

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Polynitrile anions have recently received considerable attention in the fields of coordination chemistry and mol­ecular materials (Benmansour et al., 2010 ▸). These organic anions are of inter­est due to their ability to act towards n class="Chemical">metal atoms with various coordination modes and for their high degree of electronic delocalization (Miyazaki et al., 2003 ▸; Atmani et al., 2008 ▸; Benmansour et al., 2008 ▸, 2012 ▸; Setifi et al., 2002 ▸, 2013 ▸, 2014 ▸; Addala et al., 2015 ▸). We are inter­ested in using these anionic ligands in combin­ation with other neutral bridging co-ligands to explore their structural n class="Chemical">features and properties relevant to the field of mol­ecular materials exhibiting the spin crossover (SCO) phenomenon (Dupouy et al., 2008 ▸, 2009 ▸). In an attempt to prepare such an iron(II) complex using hydro­thermal synthesis, we obtained instead the title compound [Fe(pyim)(H2O)4]SO4, (I), where pyim is 2-(pyridin-2-yl)-1H-imidazole.

Structural commentary

Fig. 1 ▸ shows the asymmetric unit of (I). The main building units in the crystal structure of (I) are octa­hedral [Fe(pyim)(H2O)4]2+ complex cations and [n class="Chemical">SO4]2− anions. The distorted octa­hedral environment of the central FeII ion is defined by two N donor atoms of the pyim ligand and by the O atoms of two water mol­ecules in the equatorial plane, while the two remaining water mol­ecules coordinate at the axial sites. The bite angle N1—FeN2 of 76.04 (7)° shows the most significant deviation from the ideal octa­hedral geometry, with the other coordination angles deviating by 0.21 (7) to 11.91 (7)°.
Figure 1

The mol­ecular structure of (I), with atom labels and displacement ellipsoids at the 50% probability level. Hydrogen bonds are shown as double dashed lines.

The Fen class="Chemical">N coordination bonds with the chelate ligand have markedly different lengths, FeN1 = 2.243 (2) and FeN2 = 2.1361 (17) Å, which are also dissimilar to those in the previously reported [Fe(dmbpy)(H2O)4]SO4 complex where dmbpy is 5,5′-dimethyl-2,2′-bi­pyridine (Belamri et al., 2014 ▸.) comprising a nearly symmetrical dipyridyl ligand [FeN = 2.176 (3) Å on average]. The torsion angles within the approximately planar five-membered chelate ring of (I) vary from 0.6 (3) to −5.2 (2)° and reflect a more pronounced deviation from planarity in comparison with the dmbpy FeII complex that exhibits a maximal torsion angle of 2.0 (3)°. The dihedral angle of 5.5 (1) ° between the aromatic rings of the pyim ligand is within the range of the values reported for the eight independent mol­ecules in the crystal structure of the non-coordinating ligand [1(1) to 17 (1)°; Tinant et al., 2010 ▸]. In the present complex, all four Fe—O bond lengths, ranging from 2.1191 (18) to 2.1340 (17) Å, are longer than the corres­ponding ones in the [Fe(dmbpy)(H2O)4]SO4 complex, which range from 2.079 (2) to 2.110 (2) Å.

Supra­molecular features

The crystal packing of (I) is stabilized by a complex hydrogen-bonding network involving the coordinating n class="Chemical">water mol­ecules and the imidazole fragment as donors to the O acceptors atoms of the sulfate anion. Each cationic [Fe(pyim)(H2O)4]2+ unit is surrounded by five [SO4]2− anions. Similarly to the crystal structure of [Fe(dmbpy)(H2O)4]SO4, pairs of axially and equatorially coordinating water mol­ecules bind to pairs of O acceptor atoms from the same [SO4]2− group, forming eight medium-strength inter­actions (Table 1 ▸). These hydrogen bonds arrange the complex mol­ecules into layers parallel to the ab plane (Fig. 2 ▸). Additional N—H⋯O and C—H⋯O hydrogen bonds involving the donors from the aromatic ligand inter­connect adjacent layers into a three-dimensional arrangement (Fig. 3 ▸). The vicinity of aromatic rings in the inter-layer region gives rise to C—H⋯π [H3⋯Cg1i = 3.033 Å; C3—H3⋯Cg1i = 117°; symmetry code: (i) = −x + , y + , z; Cg1 is the centroid of the imidazole ring] and weak π–π inter­actions [Cg1⋯Cg2ii = 3.821 Å, the shortest inter­atomic distance N3⋯C2ii = 3.325 (1) Å; symmetry code: (ii) = −x + 1, −y + 1, −z + 1; Cg1 and Cg2 are the centroids of the imidazole and pyridine rings, respectively]. C—H⋯O inter­actions are also observed (Table 1 ▸).
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O5H1O5O3i 0.78(3)2.00(3)2.785(3)175(3)
O5H2O5O1ii 0.85(4)2.00(3)2.845(3)172(4)
O6H1O6O10.71(3)2.15(3)2.857(3)170(3)
O6H2O6O3iii 0.89(3)1.85(3)2.736(3)175(3)
O7H1O7O1iii 0.64(4)2.17(3)2.809(3)173(4)
O7H2O7O4ii 0.90(4)1.83(3)2.720(3)168(4)
O8H1O8O4i 0.76(3)1.96(3)2.722(3)178(4)
O8H2O8O20.84(3)1.90(3)2.737(3)175(3)
N3H3NO2iv 0.93(3)1.93(3)2.858(3)178(3)
C4H4O2iv 0.932.403.287(3)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 2

O—H⋯O inter­actions (dashed lines) connect cationic and anionic units into layers parallel to the ab plane (view of a single layer down the c axis). H atoms not involved in hydrogen bonding have been omitted for the sake of clarity.

Figure 3

The three-dimensional packing of (I) viewed down the b axis.

Synthesis and crystallization

The title compound was obtained under hydro­thermal conditions from a mixture of iron(II) sulfate hepta­hydrate (28 mg, 0.1 mmol), 2-(pyridin-2-yl)-1H-imidazole (15 mg, 0.1 mmol) and potassium tri­cyano­methanide KC(CN)3 (26 mg, 0.2 mmol) in water-ethanol (4:1 v/v, 20 ml). The mixture was transferred to a Teflon-lined autoclave and heated at 423 K for 48 h. The autoclave was then allowed to cool to ambient temperature. Block-like yellow crystals of (I) were collected by filtration, washed with water and dried in air (yield 58%).

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms bonded to C atoms were placed at geometrically calculated positions and refined using a riding model. C—H distances were fixed to 0.93 Å for n class="Disease">aromatic C atoms, with U iso(H) = 1.2U eq(C). The H atoms attached to O and N atoms were located in a difference Fourier map and were refined isotropically.
Table 2

Experimental details

Crystal data
Chemical formula[Fe(C8H7N3)(H2O)4]SO4
M r 369.14
Crystal system, space groupOrthorhombic, P b c a
Temperature (K)293
a, b, c ()12.476(5), 11.741(5), 20.313(7)
V (3)2975.5(19)
Z 8
Radiation typeMo K
(mm1)1.19
Crystal size (mm)0.34 0.20 0.11
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2009)
T min, T max 0.802, 0.871
No. of measured, independent and observed [I > 2(I)] reflections20168, 4417, 3008
R int 0.042
(sin /)max (1)0.715
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.036, 0.091, 1.08
No. of reflections4417
No. of parameters226
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
max, min (e 3)0.47, 0.41

Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows and WinGX(Farrugia, 2012 ▸), Mercury (Macrae, 2006 ▸) and PARST (Nardelli, 1995 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015004417/wm5132sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015004417/wm5132Isup2.hkl CCDC reference: 1051905 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Fe(C8H7N3)(H2O)4]SO4F(000) = 1520
Mr = 369.14Dx = 1.648 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9606 reflections
a = 12.476 (5) Åθ = 2.5–30.0°
b = 11.741 (5) ŵ = 1.19 mm1
c = 20.313 (7) ÅT = 293 K
V = 2975.5 (19) Å3Block, yellow
Z = 80.34 × 0.20 × 0.11 mm
Bruker APEXII CCD diffractometer4417 independent reflections
Radiation source: fine-focus sealed tube3008 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ & ω scansθmax = 30.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.802, Tmax = 0.871k = −14→16
20168 measured reflectionsl = −28→27
Refinement on F2226 parameters
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.036w = 1/[σ2(Fo2) + (0.041P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.47 e Å3
4417 reflectionsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Fe10.45016 (2)0.72203 (3)0.35060 (2)0.02305 (9)
S10.74974 (4)0.47721 (5)0.30259 (2)0.02198 (11)
O10.69197 (10)0.52744 (13)0.24568 (6)0.0295 (3)
O20.69268 (12)0.50603 (15)0.36361 (7)0.0378 (4)
O30.85850 (11)0.52416 (15)0.30581 (7)0.0368 (4)
O40.75368 (13)0.35340 (15)0.29605 (7)0.0441 (4)
O50.45617 (15)0.89924 (16)0.33077 (10)0.0416 (4)
O60.50247 (15)0.66267 (16)0.25674 (7)0.0336 (4)
O70.29469 (14)0.71843 (19)0.30864 (8)0.0322 (4)
O80.61694 (12)0.72412 (17)0.37388 (8)0.0314 (4)
N10.42117 (13)0.54515 (16)0.38829 (7)0.0274 (4)
N20.40687 (14)0.74690 (16)0.45132 (8)0.0294 (4)
N30.35709 (14)0.6734 (2)0.54639 (8)0.0353 (5)
C10.42985 (17)0.4458 (2)0.35520 (10)0.0357 (5)
H10.45480.44770.31210.043*
C20.40365 (18)0.3420 (2)0.38200 (11)0.0405 (6)
H20.41070.27530.35770.049*
C30.36666 (19)0.3396 (2)0.44581 (12)0.0438 (6)
H30.34840.27070.46540.053*
C40.35690 (17)0.4400 (2)0.48053 (11)0.0387 (6)
H40.33140.43970.52350.046*
C50.38537 (15)0.5406 (2)0.45065 (9)0.0279 (5)
C60.38177 (14)0.6510 (2)0.48286 (9)0.0283 (5)
C70.36954 (17)0.7871 (2)0.55631 (11)0.0398 (6)
H70.35930.82660.59550.048*
C80.40013 (17)0.8319 (2)0.49715 (10)0.0362 (5)
H80.41420.90850.48930.043*
H1O50.510 (2)0.932 (2)0.3248 (13)0.049 (8)*
H2O50.408 (3)0.933 (3)0.3090 (15)0.084 (12)*
H1O60.5519 (19)0.632 (2)0.2580 (12)0.036 (8)*
H2O60.453 (2)0.617 (3)0.2387 (13)0.062 (9)*
H1O70.273 (2)0.672 (3)0.2986 (13)0.045 (11)*
H2O70.286 (2)0.770 (3)0.2761 (16)0.066 (10)*
H1O80.652 (2)0.760 (2)0.3515 (11)0.038 (8)*
H2O80.644 (2)0.658 (3)0.3708 (13)0.050 (9)*
H3N0.3399 (19)0.615 (2)0.5753 (13)0.054 (8)*
U11U22U33U12U13U23
Fe10.02282 (15)0.02469 (18)0.02163 (14)−0.00077 (12)0.00178 (10)0.00238 (11)
S10.0206 (2)0.0222 (3)0.0231 (2)0.00159 (19)−0.00054 (17)0.00183 (18)
O10.0279 (7)0.0296 (9)0.0309 (7)0.0009 (6)−0.0064 (5)0.0067 (6)
O20.0427 (9)0.0408 (11)0.0300 (7)0.0072 (8)0.0144 (6)0.0084 (7)
O30.0214 (7)0.0493 (12)0.0397 (8)−0.0045 (7)−0.0021 (6)0.0095 (7)
O40.0598 (10)0.0226 (10)0.0500 (9)0.0088 (8)−0.0224 (8)−0.0042 (7)
O50.0300 (9)0.0299 (11)0.0649 (11)−0.0052 (8)−0.0073 (8)0.0177 (8)
O60.0263 (8)0.0449 (12)0.0296 (8)0.0023 (9)0.0008 (6)−0.0053 (7)
O70.0292 (8)0.0304 (11)0.0370 (9)−0.0006 (8)−0.0061 (6)−0.0014 (8)
O80.0250 (8)0.0322 (11)0.0372 (8)−0.0020 (8)−0.0001 (6)0.0057 (8)
N10.0290 (9)0.0306 (11)0.0226 (8)−0.0024 (8)−0.0005 (6)0.0035 (7)
N20.0272 (9)0.0343 (12)0.0267 (9)0.0011 (8)0.0019 (7)−0.0027 (7)
N30.0344 (10)0.0474 (14)0.0241 (9)−0.0006 (9)0.0072 (7)0.0031 (8)
C10.0399 (12)0.0366 (15)0.0305 (11)0.0023 (11)−0.0040 (9)−0.0014 (9)
C20.0422 (13)0.0323 (15)0.0470 (13)−0.0037 (12)−0.0076 (10)−0.0068 (11)
C30.0430 (14)0.0397 (17)0.0486 (14)−0.0108 (12)−0.0005 (10)0.0068 (11)
C40.0341 (12)0.0483 (17)0.0338 (11)−0.0112 (11)0.0032 (9)0.0090 (10)
C50.0209 (9)0.0370 (14)0.0257 (9)−0.0040 (9)−0.0015 (7)0.0048 (8)
C60.0211 (9)0.0413 (15)0.0227 (9)−0.0017 (9)0.0033 (7)0.0050 (8)
C70.0352 (12)0.0516 (18)0.0326 (11)0.0047 (11)0.0045 (9)−0.0049 (10)
C80.0353 (12)0.0340 (15)0.0395 (12)0.0010 (11)0.0022 (9)−0.0073 (10)
Fe1—O72.1191 (18)N1—C11.351 (3)
Fe1—O52.121 (2)N2—C61.333 (3)
Fe1—O62.1323 (15)N2—C81.368 (3)
Fe1—O82.1340 (17)N3—C61.353 (2)
Fe1—N22.1361 (17)N3—C71.359 (3)
Fe1—N12.243 (2)N3—H3N0.93 (3)
S1—O41.4605 (19)C1—C21.373 (4)
S1—O31.4661 (16)C1—H10.9300
S1—O21.4688 (14)C2—C31.376 (3)
S1—O11.4844 (14)C2—H20.9300
O5—H1O50.78 (3)C3—C41.379 (4)
O5—H2O50.85 (3)C3—H30.9300
O6—H1O60.71 (2)C4—C51.374 (3)
O6—H2O60.89 (3)C4—H40.9300
O7—H1O70.64 (3)C5—C61.453 (3)
O7—H2O70.90 (3)C7—C81.366 (3)
O8—H1O80.76 (3)C7—H70.9300
O8—H2O80.84 (3)C8—H80.9300
N1—C51.344 (2)
O7—Fe1—O588.60 (8)C5—N1—C1117.44 (19)
O7—Fe1—O685.07 (7)C5—N1—Fe1114.36 (15)
O5—Fe1—O698.06 (8)C1—N1—Fe1128.10 (14)
O7—Fe1—O8169.08 (6)C6—N2—C8105.96 (18)
O5—Fe1—O889.79 (7)C6—N2—Fe1113.84 (14)
O6—Fe1—O884.46 (7)C8—N2—Fe1140.12 (17)
O7—Fe1—N299.00 (7)C6—N3—C7107.85 (19)
O5—Fe1—N293.25 (8)C6—N3—H3N120.6 (17)
O6—Fe1—N2168.09 (7)C7—N3—H3N131.4 (17)
O8—Fe1—N291.87 (7)N1—C1—C2123.3 (2)
O7—Fe1—N188.35 (7)N1—C1—H1118.3
O5—Fe1—N1168.26 (7)C2—C1—H1118.3
O6—Fe1—N192.97 (7)C1—C2—C3118.2 (2)
O8—Fe1—N195.29 (7)C1—C2—H2120.9
N2—Fe1—N176.04 (7)C3—C2—H2120.9
O4—S1—O3110.31 (10)C2—C3—C4119.5 (2)
O4—S1—O2108.80 (10)C2—C3—H3120.2
O3—S1—O2108.93 (9)C4—C3—H3120.2
O4—S1—O1109.93 (9)C5—C4—C3119.1 (2)
O3—S1—O1109.55 (9)C5—C4—H4120.5
O2—S1—O1109.29 (9)C3—C4—H4120.5
Fe1—O5—H1O5123 (2)N1—C5—C4122.4 (2)
Fe1—O5—H2O5122 (2)N1—C5—C6113.50 (18)
H1O5—O5—H2O5108 (3)C4—C5—C6124.04 (19)
Fe1—O6—H1O6113.3 (19)N2—C6—N3110.3 (2)
Fe1—O6—H2O6110.5 (17)N2—C6—C5122.02 (17)
H1O6—O6—H2O6108 (3)N3—C6—C5127.6 (2)
Fe1—O7—H1O7122 (3)N3—C7—C8106.2 (2)
Fe1—O7—H2O7113.1 (18)N3—C7—H7126.9
H1O7—O7—H2O7106 (3)C8—C7—H7126.9
Fe1—O8—H1O8115.5 (19)C7—C8—N2109.6 (2)
Fe1—O8—H2O8111.1 (18)C7—C8—H8125.2
H1O8—O8—H2O8104 (3)N2—C8—H8125.2
D—H···AD—HH···AD···AD—H···A
O5—H1O5···O3i0.78 (3)2.00 (3)2.785 (3)175 (3)
O5—H2O5···O1ii0.85 (4)2.00 (3)2.845 (3)172 (4)
O6—H1O6···O10.71 (3)2.15 (3)2.857 (3)170 (3)
O6—H2O6···O3iii0.89 (3)1.85 (3)2.736 (3)175 (3)
O7—H1O7···O1iii0.64 (4)2.17 (3)2.809 (3)173 (4)
O7—H2O7···O4ii0.90 (4)1.83 (3)2.720 (3)168 (4)
O8—H1O8···O4i0.76 (3)1.96 (3)2.722 (3)178 (4)
O8—H2O8···O20.84 (3)1.90 (3)2.737 (3)175 (3)
N3—H3N···O2iv0.93 (3)1.93 (3)2.858 (3)178 (3)
C4—H4···O2iv0.932.403.287 (3)160
  8 in total

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