Literature DB >> 21577733

Tetra-aqua-(2,2'-bipyridine-5,5'-dicarboxyl-ato-κN,N')nickel(II) dihydrate.

Hua Yang1.   

Abstract

In the title compound, [Ni(C(12)H(6)N(2)O(4))(H(2)O)(4)]·2H(2)O, obtained from a basic solution of 2,2'-bipyridine-5,5'-dicarboxyl-ate and nickel(II) chloride in water, the central Ni(II) cation (site symmetry 2) is coordinated by two N atoms from the 2,2'-bipyridine-5,5'-dicarboxyl-ate ligand and four aqua O atoms. The N-Ni-N angle is 78.64 (8)°. Weak but significant π-π stacking inter-actions exist between the pyridine rings with a centroid-centroid distance of 3.652 (8) Å. In addition, four O atoms of the two carboxyl groups form hydrogen bonds with both coordinated and uncoordinated water mol-ecules, forming an infinite three-dimensional network.

Entities:  

Year:  2009        PMID: 21577733      PMCID: PMC2970486          DOI: 10.1107/S1600536809035910

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For attempts to synthesize 5,5′- and 6,6′-substituted 2,2′-bipyridine derivatives, see: He et al. (2009 ▶); Karaca et al. (2009 ▶); Yousefi et al. (2008 ▶).

Experimental

Crystal data

[Ni(C12H6N2O4)(H2O)4]·2H2O M = 408.97 Monoclinic, a = 12.4787 (2) Å b = 9.8152 (2) Å c = 12.6533 (2) Å β = 92.107 (2)° V = 1548.74 (5) Å3 Z = 4 Mo Kα radiation μ = 1.31 mm−1 T = 120 K 0.18 × 0.16 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.730, T max = 0.828 8276 measured reflections 1691 independent reflections 1379 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.065 S = 0.98 1691 reflections 138 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035910/ng2636sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035910/ng2636Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H6N2O4)(H2O)4]·2H2OF(000) = 848.0
Mr = 408.97Dx = 1.754 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8276 reflections
a = 12.4787 (2) Åθ = 3.1–27.0°
b = 9.8152 (2) ŵ = 1.31 mm1
c = 12.6533 (2) ÅT = 120 K
β = 92.107 (2)°Prism, colourless
V = 1548.74 (5) Å30.18 × 0.16 × 0.10 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer1691 independent reflections
Radiation source: fine-focus sealed tube1379 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 27.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −15→15
Tmin = 0.730, Tmax = 0.828k = −12→12
8276 measured reflectionsl = −14→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0426P)2] where P = (Fo2 + 2Fc2)/3
1691 reflections(Δ/σ)max = 0.001
138 parametersΔρmax = 0.44 e Å3
6 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.27554 (3)0.75000.01072 (11)
O10.03285 (11)0.42083 (13)0.86619 (11)0.0142 (3)
H110.0898 (11)0.4670 (18)0.8664 (17)0.019 (6)*
H12−0.0189 (14)0.475 (2)0.864 (2)0.044 (8)*
O20.15591 (10)0.29226 (13)0.70290 (10)0.0129 (3)
H210.1953 (16)0.315 (2)0.7545 (13)0.032 (7)*
H220.184 (2)0.2274 (19)0.672 (2)0.052 (9)*
O30.26260 (10)−0.06943 (12)1.12935 (10)0.0145 (3)
O40.21890 (10)0.15053 (12)1.12590 (10)0.0166 (3)
O5−0.12732 (13)0.60197 (15)0.83875 (13)0.0301 (4)
H51−0.1494 (18)0.6770 (14)0.8598 (18)0.033 (7)*
H52−0.1726 (19)0.580 (3)0.7913 (18)0.067 (10)*
N10.04499 (11)0.11232 (14)0.84534 (11)0.0106 (3)
C10.21332 (13)0.03194 (17)1.08927 (14)0.0119 (4)
C20.14678 (14)0.01069 (17)0.98899 (14)0.0116 (4)
C30.13045 (14)−0.11715 (17)0.94398 (14)0.0119 (4)
H30.1595−0.19600.97780.014*
C40.07152 (14)−0.12874 (17)0.84950 (14)0.0126 (4)
H40.0596−0.21560.81800.015*
C50.03040 (13)−0.01275 (17)0.80161 (14)0.0108 (4)
C70.10106 (14)0.12224 (17)0.93712 (14)0.0117 (4)
H70.11000.20970.96830.014*
U11U22U33U12U13U23
Ni10.01160 (18)0.00978 (17)0.01056 (18)0.000−0.00259 (12)0.000
O10.0113 (7)0.0133 (7)0.0177 (7)0.0017 (5)−0.0029 (5)−0.0029 (5)
O20.0122 (6)0.0148 (7)0.0115 (7)0.0004 (5)−0.0030 (5)−0.0024 (5)
O30.0155 (7)0.0126 (6)0.0151 (7)−0.0005 (5)−0.0059 (5)0.0034 (5)
O40.0203 (7)0.0133 (7)0.0156 (7)0.0013 (5)−0.0064 (6)−0.0043 (5)
O50.0286 (9)0.0212 (8)0.0392 (10)0.0123 (6)−0.0167 (7)−0.0135 (7)
N10.0109 (8)0.0106 (8)0.0103 (8)−0.0013 (5)−0.0011 (6)0.0005 (6)
C10.0101 (9)0.0143 (9)0.0113 (9)−0.0019 (7)0.0008 (7)0.0014 (7)
C20.0108 (8)0.0148 (9)0.0092 (9)−0.0002 (7)0.0003 (7)0.0005 (7)
C30.0110 (9)0.0118 (9)0.0128 (9)0.0010 (6)−0.0007 (7)0.0020 (7)
C40.0132 (9)0.0108 (9)0.0140 (9)−0.0006 (7)0.0011 (7)−0.0018 (7)
C50.0094 (8)0.0124 (9)0.0106 (9)−0.0006 (6)0.0009 (7)−0.0007 (7)
C70.0110 (9)0.0124 (9)0.0118 (9)−0.0014 (7)0.0013 (7)−0.0015 (7)
Ni1—O2i2.0622 (12)O5—H520.837 (10)
Ni1—O22.0622 (12)N1—C71.337 (2)
Ni1—N1i2.0706 (14)N1—C51.356 (2)
Ni1—N12.0706 (14)C1—C21.505 (2)
Ni1—O12.0782 (13)C2—C71.388 (2)
Ni1—O1i2.0782 (13)C2—C31.390 (2)
O1—H110.843 (9)C3—C41.385 (2)
O1—H120.834 (10)C3—H30.9500
O2—H210.833 (10)C4—C51.380 (2)
O2—H220.834 (10)C4—H40.9500
O3—C11.266 (2)C5—C5i1.486 (3)
O4—C11.254 (2)C7—H70.9500
O5—H510.834 (10)
O2i—Ni1—O2170.87 (7)C7—N1—C5118.59 (14)
O2i—Ni1—N1i89.51 (5)C7—N1—Ni1124.87 (11)
O2—Ni1—N1i97.57 (5)C5—N1—Ni1115.66 (12)
O2i—Ni1—N197.57 (5)O4—C1—O3124.20 (16)
O2—Ni1—N189.51 (5)O4—C1—C2117.49 (15)
N1i—Ni1—N178.63 (8)O3—C1—C2118.27 (15)
O2i—Ni1—O184.53 (5)C7—C2—C3117.82 (16)
O2—Ni1—O189.21 (5)C7—C2—C1119.58 (15)
N1i—Ni1—O1170.17 (6)C3—C2—C1122.59 (15)
N1—Ni1—O194.39 (5)C4—C3—C2119.54 (15)
O2i—Ni1—O1i89.21 (5)C4—C3—H3120.2
O2—Ni1—O1i84.53 (5)C2—C3—H3120.2
N1i—Ni1—O1i94.39 (5)C5—C4—C3119.24 (16)
N1—Ni1—O1i170.17 (6)C5—C4—H4120.4
O1—Ni1—O1i93.34 (7)C3—C4—H4120.4
Ni1—O1—H11121.0 (15)N1—C5—C4121.70 (16)
Ni1—O1—H12106.4 (18)N1—C5—C5i114.53 (10)
H11—O1—H12108 (2)C4—C5—C5i123.75 (10)
Ni1—O2—H21109.3 (17)N1—C7—C2123.09 (15)
Ni1—O2—H22119.7 (19)N1—C7—H7118.5
H21—O2—H22109 (2)C2—C7—H7118.5
H51—O5—H52104 (3)
O2i—Ni1—N1—C7−99.70 (14)C7—C2—C3—C41.0 (3)
O2—Ni1—N1—C774.51 (14)C1—C2—C3—C4−177.65 (16)
N1i—Ni1—N1—C7172.33 (18)C2—C3—C4—C50.2 (3)
O1—Ni1—N1—C7−14.65 (15)C7—N1—C5—C40.2 (3)
O1i—Ni1—N1—C7127.1 (3)Ni1—N1—C5—C4169.99 (14)
O2i—Ni1—N1—C591.22 (12)C7—N1—C5—C5i−178.46 (17)
O2—Ni1—N1—C5−94.57 (12)Ni1—N1—C5—C5i−8.7 (2)
N1i—Ni1—N1—C53.25 (9)C3—C4—C5—N1−0.9 (3)
O1—Ni1—N1—C5176.26 (12)C3—C4—C5—C5i177.6 (2)
O1i—Ni1—N1—C5−42.0 (4)C5—N1—C7—C21.2 (3)
O4—C1—C2—C74.6 (3)Ni1—N1—C7—C2−167.62 (13)
O3—C1—C2—C7−173.22 (16)C3—C2—C7—N1−1.8 (3)
O4—C1—C2—C3−176.75 (16)C1—C2—C7—N1176.94 (15)
O3—C1—C2—C35.4 (3)
D—H···AD—HH···AD···AD—H···A
O5—H52···O3ii0.84 (1)2.18 (2)2.9566 (19)155 (3)
O2—H22···O3iii0.83 (1)1.92 (1)2.7410 (18)168 (3)
O5—H51···O4iv0.83 (1)1.91 (1)2.7286 (19)166 (2)
O2—H21···O4v0.83 (1)1.85 (1)2.6831 (17)175 (2)
O1—H11···O4v0.84 (1)2.65 (2)3.1740 (18)122 (2)
O1—H11···O3v0.84 (1)2.10 (1)2.9386 (18)176 (2)
O1—H12···O50.83 (1)1.86 (1)2.688 (2)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H52⋯O3i0.837 (10)2.178 (16)2.9566 (19)155 (3)
O2—H22⋯O3ii0.834 (10)1.921 (12)2.7410 (18)168 (3)
O5—H51⋯O4iii0.834 (10)1.913 (11)2.7286 (19)166 (2)
O2—H21⋯O4iv0.833 (10)1.852 (10)2.6831 (17)175 (2)
O1—H11⋯O4iv0.843 (9)2.650 (17)3.1740 (18)121.6 (16)
O1—H11⋯O3iv0.843 (9)2.097 (10)2.9386 (18)175.9 (19)
O1—H12⋯O50.834 (10)1.861 (11)2.688 (2)171 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dimethyl 6,6'-dicyano-2,2'-bipyridine-3,3'-dicarboxyl-ate.

Authors:  Xiao He; Gui-Rong Qu; Dongsheng Deng; Baoming Ji
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

3.  Diaqua-(2,2'-bipyridine-5,5'-dicarboxyl-ato-κN,N')(ethyl-enediamine-κN,N')copper(II) 2.5-hydrate.

Authors:  Mohammad Yousefi; Aida Khalighi; Nasim Tadayon Pour; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20

4.  Bis[dichlorido(5,5'-dimethyl-2,2'-bi-pyridine-κN,N')gold(III)] tetra-chlorido-aurate(III) dichloridooaurate(I).

Authors:  Selvi Karaca; Mehmet Akkurt; Nasser Safari; Vahid Amani; Orhan Büyükgüngör; Anita Abedi
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1.  Crystal structure of tetra-aqua-(5,5'-dimethyl-2,2'-bipyridyl-κ(2) N,N')iron(II) sulfate.

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