| Literature DB >> 21577733 |
Hua Yang1.
Abstract
In the title compound, [Ni(C(12)H(6)N(2)O(4))(H(2)O)(4)]·2H(2)O, obtained from a basic solution of 2,2'-bipyridine-5,5'-dicarboxyl-ate and nickel(II) chloride in water, the central Ni(II) cation (site symmetry 2) is coordinated by two N atoms from the 2,2'-bipyridine-5,5'-dicarboxyl-ate ligand and four aqua O atoms. The N-Ni-N angle is 78.64 (8)°. Weak but significant π-π stacking inter-actions exist between the pyridine rings with a centroid-centroid distance of 3.652 (8) Å. In addition, four O atoms of the two carboxyl groups form hydrogen bonds with both coordinated and uncoordinated water mol-ecules, forming an infinite three-dimensional network.Entities:
Year: 2009 PMID: 21577733 PMCID: PMC2970486 DOI: 10.1107/S1600536809035910
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C12H6N2O4)(H2O)4]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 8276 reflections |
| θ = 3.1–27.0° | |
| µ = 1.31 mm−1 | |
| β = 92.107 (2)° | Prism, colourless |
| 0.18 × 0.16 × 0.10 mm | |
| Bruker APEXII CCD area-detector diffractometer | 1691 independent reflections |
| Radiation source: fine-focus sealed tube | 1379 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 8276 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1691 reflections | (Δ/σ)max = 0.001 |
| 138 parameters | Δρmax = 0.44 e Å−3 |
| 6 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.0000 | 0.27554 (3) | 0.7500 | 0.01072 (11) | |
| O1 | 0.03285 (11) | 0.42083 (13) | 0.86619 (11) | 0.0142 (3) | |
| H11 | 0.0898 (11) | 0.4670 (18) | 0.8664 (17) | 0.019 (6)* | |
| H12 | −0.0189 (14) | 0.475 (2) | 0.864 (2) | 0.044 (8)* | |
| O2 | 0.15591 (10) | 0.29226 (13) | 0.70290 (10) | 0.0129 (3) | |
| H21 | 0.1953 (16) | 0.315 (2) | 0.7545 (13) | 0.032 (7)* | |
| H22 | 0.184 (2) | 0.2274 (19) | 0.672 (2) | 0.052 (9)* | |
| O3 | 0.26260 (10) | −0.06943 (12) | 1.12935 (10) | 0.0145 (3) | |
| O4 | 0.21890 (10) | 0.15053 (12) | 1.12590 (10) | 0.0166 (3) | |
| O5 | −0.12732 (13) | 0.60197 (15) | 0.83875 (13) | 0.0301 (4) | |
| H51 | −0.1494 (18) | 0.6770 (14) | 0.8598 (18) | 0.033 (7)* | |
| H52 | −0.1726 (19) | 0.580 (3) | 0.7913 (18) | 0.067 (10)* | |
| N1 | 0.04499 (11) | 0.11232 (14) | 0.84534 (11) | 0.0106 (3) | |
| C1 | 0.21332 (13) | 0.03194 (17) | 1.08927 (14) | 0.0119 (4) | |
| C2 | 0.14678 (14) | 0.01069 (17) | 0.98899 (14) | 0.0116 (4) | |
| C3 | 0.13045 (14) | −0.11715 (17) | 0.94398 (14) | 0.0119 (4) | |
| H3 | 0.1595 | −0.1960 | 0.9778 | 0.014* | |
| C4 | 0.07152 (14) | −0.12874 (17) | 0.84950 (14) | 0.0126 (4) | |
| H4 | 0.0596 | −0.2156 | 0.8180 | 0.015* | |
| C5 | 0.03040 (13) | −0.01275 (17) | 0.80161 (14) | 0.0108 (4) | |
| C7 | 0.10106 (14) | 0.12224 (17) | 0.93712 (14) | 0.0117 (4) | |
| H7 | 0.1100 | 0.2097 | 0.9683 | 0.014* |
| Ni1 | 0.01160 (18) | 0.00978 (17) | 0.01056 (18) | 0.000 | −0.00259 (12) | 0.000 |
| O1 | 0.0113 (7) | 0.0133 (7) | 0.0177 (7) | 0.0017 (5) | −0.0029 (5) | −0.0029 (5) |
| O2 | 0.0122 (6) | 0.0148 (7) | 0.0115 (7) | 0.0004 (5) | −0.0030 (5) | −0.0024 (5) |
| O3 | 0.0155 (7) | 0.0126 (6) | 0.0151 (7) | −0.0005 (5) | −0.0059 (5) | 0.0034 (5) |
| O4 | 0.0203 (7) | 0.0133 (7) | 0.0156 (7) | 0.0013 (5) | −0.0064 (6) | −0.0043 (5) |
| O5 | 0.0286 (9) | 0.0212 (8) | 0.0392 (10) | 0.0123 (6) | −0.0167 (7) | −0.0135 (7) |
| N1 | 0.0109 (8) | 0.0106 (8) | 0.0103 (8) | −0.0013 (5) | −0.0011 (6) | 0.0005 (6) |
| C1 | 0.0101 (9) | 0.0143 (9) | 0.0113 (9) | −0.0019 (7) | 0.0008 (7) | 0.0014 (7) |
| C2 | 0.0108 (8) | 0.0148 (9) | 0.0092 (9) | −0.0002 (7) | 0.0003 (7) | 0.0005 (7) |
| C3 | 0.0110 (9) | 0.0118 (9) | 0.0128 (9) | 0.0010 (6) | −0.0007 (7) | 0.0020 (7) |
| C4 | 0.0132 (9) | 0.0108 (9) | 0.0140 (9) | −0.0006 (7) | 0.0011 (7) | −0.0018 (7) |
| C5 | 0.0094 (8) | 0.0124 (9) | 0.0106 (9) | −0.0006 (6) | 0.0009 (7) | −0.0007 (7) |
| C7 | 0.0110 (9) | 0.0124 (9) | 0.0118 (9) | −0.0014 (7) | 0.0013 (7) | −0.0015 (7) |
| Ni1—O2i | 2.0622 (12) | O5—H52 | 0.837 (10) |
| Ni1—O2 | 2.0622 (12) | N1—C7 | 1.337 (2) |
| Ni1—N1i | 2.0706 (14) | N1—C5 | 1.356 (2) |
| Ni1—N1 | 2.0706 (14) | C1—C2 | 1.505 (2) |
| Ni1—O1 | 2.0782 (13) | C2—C7 | 1.388 (2) |
| Ni1—O1i | 2.0782 (13) | C2—C3 | 1.390 (2) |
| O1—H11 | 0.843 (9) | C3—C4 | 1.385 (2) |
| O1—H12 | 0.834 (10) | C3—H3 | 0.9500 |
| O2—H21 | 0.833 (10) | C4—C5 | 1.380 (2) |
| O2—H22 | 0.834 (10) | C4—H4 | 0.9500 |
| O3—C1 | 1.266 (2) | C5—C5i | 1.486 (3) |
| O4—C1 | 1.254 (2) | C7—H7 | 0.9500 |
| O5—H51 | 0.834 (10) | ||
| O2i—Ni1—O2 | 170.87 (7) | C7—N1—C5 | 118.59 (14) |
| O2i—Ni1—N1i | 89.51 (5) | C7—N1—Ni1 | 124.87 (11) |
| O2—Ni1—N1i | 97.57 (5) | C5—N1—Ni1 | 115.66 (12) |
| O2i—Ni1—N1 | 97.57 (5) | O4—C1—O3 | 124.20 (16) |
| O2—Ni1—N1 | 89.51 (5) | O4—C1—C2 | 117.49 (15) |
| N1i—Ni1—N1 | 78.63 (8) | O3—C1—C2 | 118.27 (15) |
| O2i—Ni1—O1 | 84.53 (5) | C7—C2—C3 | 117.82 (16) |
| O2—Ni1—O1 | 89.21 (5) | C7—C2—C1 | 119.58 (15) |
| N1i—Ni1—O1 | 170.17 (6) | C3—C2—C1 | 122.59 (15) |
| N1—Ni1—O1 | 94.39 (5) | C4—C3—C2 | 119.54 (15) |
| O2i—Ni1—O1i | 89.21 (5) | C4—C3—H3 | 120.2 |
| O2—Ni1—O1i | 84.53 (5) | C2—C3—H3 | 120.2 |
| N1i—Ni1—O1i | 94.39 (5) | C5—C4—C3 | 119.24 (16) |
| N1—Ni1—O1i | 170.17 (6) | C5—C4—H4 | 120.4 |
| O1—Ni1—O1i | 93.34 (7) | C3—C4—H4 | 120.4 |
| Ni1—O1—H11 | 121.0 (15) | N1—C5—C4 | 121.70 (16) |
| Ni1—O1—H12 | 106.4 (18) | N1—C5—C5i | 114.53 (10) |
| H11—O1—H12 | 108 (2) | C4—C5—C5i | 123.75 (10) |
| Ni1—O2—H21 | 109.3 (17) | N1—C7—C2 | 123.09 (15) |
| Ni1—O2—H22 | 119.7 (19) | N1—C7—H7 | 118.5 |
| H21—O2—H22 | 109 (2) | C2—C7—H7 | 118.5 |
| H51—O5—H52 | 104 (3) | ||
| O2i—Ni1—N1—C7 | −99.70 (14) | C7—C2—C3—C4 | 1.0 (3) |
| O2—Ni1—N1—C7 | 74.51 (14) | C1—C2—C3—C4 | −177.65 (16) |
| N1i—Ni1—N1—C7 | 172.33 (18) | C2—C3—C4—C5 | 0.2 (3) |
| O1—Ni1—N1—C7 | −14.65 (15) | C7—N1—C5—C4 | 0.2 (3) |
| O1i—Ni1—N1—C7 | 127.1 (3) | Ni1—N1—C5—C4 | 169.99 (14) |
| O2i—Ni1—N1—C5 | 91.22 (12) | C7—N1—C5—C5i | −178.46 (17) |
| O2—Ni1—N1—C5 | −94.57 (12) | Ni1—N1—C5—C5i | −8.7 (2) |
| N1i—Ni1—N1—C5 | 3.25 (9) | C3—C4—C5—N1 | −0.9 (3) |
| O1—Ni1—N1—C5 | 176.26 (12) | C3—C4—C5—C5i | 177.6 (2) |
| O1i—Ni1—N1—C5 | −42.0 (4) | C5—N1—C7—C2 | 1.2 (3) |
| O4—C1—C2—C7 | 4.6 (3) | Ni1—N1—C7—C2 | −167.62 (13) |
| O3—C1—C2—C7 | −173.22 (16) | C3—C2—C7—N1 | −1.8 (3) |
| O4—C1—C2—C3 | −176.75 (16) | C1—C2—C7—N1 | 176.94 (15) |
| O3—C1—C2—C3 | 5.4 (3) |
| H··· | ||||
| O5—H52···O3ii | 0.84 (1) | 2.18 (2) | 2.9566 (19) | 155 (3) |
| O2—H22···O3iii | 0.83 (1) | 1.92 (1) | 2.7410 (18) | 168 (3) |
| O5—H51···O4iv | 0.83 (1) | 1.91 (1) | 2.7286 (19) | 166 (2) |
| O2—H21···O4v | 0.83 (1) | 1.85 (1) | 2.6831 (17) | 175 (2) |
| O1—H11···O4v | 0.84 (1) | 2.65 (2) | 3.1740 (18) | 122 (2) |
| O1—H11···O3v | 0.84 (1) | 2.10 (1) | 2.9386 (18) | 176 (2) |
| O1—H12···O5 | 0.83 (1) | 1.86 (1) | 2.688 (2) | 171 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H52⋯O3i | 0.837 (10) | 2.178 (16) | 2.9566 (19) | 155 (3) |
| O2—H22⋯O3ii | 0.834 (10) | 1.921 (12) | 2.7410 (18) | 168 (3) |
| O5—H51⋯O4iii | 0.834 (10) | 1.913 (11) | 2.7286 (19) | 166 (2) |
| O2—H21⋯O4iv | 0.833 (10) | 1.852 (10) | 2.6831 (17) | 175 (2) |
| O1—H11⋯O4iv | 0.843 (9) | 2.650 (17) | 3.1740 (18) | 121.6 (16) |
| O1—H11⋯O3iv | 0.843 (9) | 2.097 (10) | 2.9386 (18) | 175.9 (19) |
| O1—H12⋯O5 | 0.834 (10) | 1.861 (11) | 2.688 (2) | 171 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .