Literature DB >> 25546301

Crystal structure of a fully glycosylated HIV-1 gp120 core reveals a stabilizing role for the glycan at Asn262.

Leopold Kong1, Ian A Wilson, Peter D Kwong.   

Abstract

The crystal structure of a fully glycosylated HIV-1 gp120 core in complex with CD4 receptor and Fab 17b at 4.5-Å resolution reveals 9 of the 15 N-linked glycans of core gp120 to be partially ordered. The glycan at position Asn262 had the most extensive and well-ordered electron density, and a GlcNAc(2)Man(7) was modeled. The GlcNAc stem of this glycan is largely buried in a cleft in gp120, suggesting a role in gp120 folding and stability. Its arms interact with the stems of neighboring glycans from the oligomannose patch, which is a major target for broadly neutralizing antibodies.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  HIV-1 gp120; glycan shield; role of N262

Mesh:

Substances:

Year:  2015        PMID: 25546301      PMCID: PMC4409329          DOI: 10.1002/prot.24747

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  18 in total

1.  Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates.

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Journal:  Structure       Date:  2000-12-15       Impact factor: 5.006

2.  Crystal structure of an HIV-binding recombinant fragment of human CD4.

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Journal:  Nature       Date:  1990-11-29       Impact factor: 49.962

Review 3.  Mechanisms and principles of N-linked protein glycosylation.

Authors:  Flavio Schwarz; Markus Aebi
Journal:  Curr Opin Struct Biol       Date:  2011-10       Impact factor: 6.809

4.  Accessing the Kabat antibody sequence database by computer.

Authors:  A C Martin
Journal:  Proteins       Date:  1996-05

5.  The molecular surface package.

Authors:  M L Connolly
Journal:  J Mol Graph       Date:  1993-06

Review 6.  Computational glycoscience: characterizing the spatial and temporal properties of glycans and glycan-protein complexes.

Authors:  Robert J Woods; Matthew B Tessier
Journal:  Curr Opin Struct Biol       Date:  2010-08-12       Impact factor: 6.809

7.  Antibody neutralization and escape by HIV-1.

Authors:  Xiping Wei; Julie M Decker; Shuyi Wang; Huxiong Hui; John C Kappes; Xiaoyun Wu; Jesus F Salazar-Gonzalez; Maria G Salazar; J Michael Kilby; Michael S Saag; Natalia L Komarova; Martin A Nowak; Beatrice H Hahn; Peter D Kwong; George M Shaw
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

8.  The antigenic structure of the HIV gp120 envelope glycoprotein.

Authors:  R Wyatt; P D Kwong; E Desjardins; R W Sweet; J Robinson; W A Hendrickson; J G Sodroski
Journal:  Nature       Date:  1998-06-18       Impact factor: 49.962

9.  Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target.

Authors:  Laura M Walker; Sanjay K Phogat; Po-Ying Chan-Hui; Denise Wagner; Pham Phung; Julie L Goss; Terri Wrin; Melissa D Simek; Steven Fling; Jennifer L Mitcham; Jennifer K Lehrman; Frances H Priddy; Ole A Olsen; Steven M Frey; Phillip W Hammond; Stephen Kaminsky; Timothy Zamb; Matthew Moyle; Wayne C Koff; Pascal Poignard; Dennis R Burton
Journal:  Science       Date:  2009-09-03       Impact factor: 47.728

10.  Broad neutralization coverage of HIV by multiple highly potent antibodies.

Authors:  Laura M Walker; Michael Huber; Katie J Doores; Emilia Falkowska; Robert Pejchal; Jean-Philippe Julien; Sheng-Kai Wang; Alejandra Ramos; Po-Ying Chan-Hui; Matthew Moyle; Jennifer L Mitcham; Phillip W Hammond; Ole A Olsen; Pham Phung; Steven Fling; Chi-Huey Wong; Sanjay Phogat; Terri Wrin; Melissa D Simek; Wayne C Koff; Ian A Wilson; Dennis R Burton; Pascal Poignard
Journal:  Nature       Date:  2011-09-22       Impact factor: 49.962

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  31 in total

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Authors:  Qingbo Liu; Priyamvada Acharya; Michael A Dolan; Peng Zhang; Christina Guzzo; Jacky Lu; Alice Kwon; Deepali Gururani; Huiyi Miao; Tatsiana Bylund; Gwo-Yu Chuang; Aliaksandr Druz; Tongqing Zhou; William J Rice; Christoph Wigge; Bridget Carragher; Clinton S Potter; Peter D Kwong; Paolo Lusso
Journal:  Nat Struct Mol Biol       Date:  2017-02-20       Impact factor: 15.369

2.  Conformational Engineering of HIV-1 Env Based on Mutational Tolerance in the CD4 and PG16 Bound States.

Authors:  Jeremiah D Heredia; Jihye Park; Hannah Choi; Kevin S Gill; Erik Procko
Journal:  J Virol       Date:  2019-05-15       Impact factor: 5.103

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Authors:  Rebecca L R Powell; Maxim Totrov; Vincenza Itri; Xiaomei Liu; Alisa Fox; Susan Zolla-Pazner
Journal:  J Virol       Date:  2017-08-10       Impact factor: 5.103

4.  Griffithsin Retains Anti-HIV-1 Potency with Changes in gp120 Glycosylation and Complements Broadly Neutralizing Antibodies PGT121 and PGT126.

Authors:  Kathryn Fischer; Kimberly Nguyen; Patricia J LiWang
Journal:  Antimicrob Agents Chemother       Date:  2019-12-20       Impact factor: 5.191

Review 5.  Mass spectrometry for the identification and analysis of highly complex glycosylation of therapeutic or pathogenic proteins.

Authors:  Yukako Ohyama; Kazuki Nakajima; Matthew B Renfrow; Jan Novak; Kazuo Takahashi
Journal:  Expert Rev Proteomics       Date:  2020-05-28       Impact factor: 3.940

6.  Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy.

Authors:  Jeong Hyun Lee; Natalia de Val; Dmitry Lyumkis; Andrew B Ward
Journal:  Structure       Date:  2015-09-17       Impact factor: 5.006

7.  Structure of an HIV-2 gp120 in Complex with CD4.

Authors:  Yunji W Davenport; Anthony P West; Pamela J Bjorkman
Journal:  J Virol       Date:  2015-11-25       Impact factor: 5.103

8.  Complete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer.

Authors:  Leopold Kong; Alba Torrents de la Peña; Marc C Deller; Fernando Garces; Kwinten Sliepen; Yuanzi Hua; Robyn L Stanfield; Rogier W Sanders; Ian A Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

9.  Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G.

Authors:  Guillaume B E Stewart-Jones; Cinque Soto; Thomas Lemmin; Gwo-Yu Chuang; Aliaksandr Druz; Rui Kong; Paul V Thomas; Kshitij Wagh; Tongqing Zhou; Anna-Janina Behrens; Tatsiana Bylund; Chang W Choi; Jack R Davison; Ivelin S Georgiev; M Gordon Joyce; Young Do Kwon; Marie Pancera; Justin Taft; Yongping Yang; Baoshan Zhang; Sachin S Shivatare; Vidya S Shivatare; Chang-Chun D Lee; Chung-Yi Wu; Carole A Bewley; Dennis R Burton; Wayne C Koff; Mark Connors; Max Crispin; Ulrich Baxa; Bette T Korber; Chi-Huey Wong; John R Mascola; Peter D Kwong
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

10.  Roles of glycans in interactions between gp120 and HIV broadly neutralizing antibodies.

Authors:  Yifei Qi; Sunhwan Jo; Wonpil Im
Journal:  Glycobiology       Date:  2015-11-03       Impact factor: 4.313

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