Literature DB >> 25534324

Emerging roles of tRNA in adaptive translation, signalling dynamics and disease.

Sebastian Kirchner1, Zoya Ignatova2.   

Abstract

tRNAs, nexus molecules between mRNAs and proteins, have a central role in translation. Recent discoveries have revealed unprecedented complexity of tRNA biosynthesis, modification patterns, regulation and function. In this Review, we present emerging concepts regarding how tRNA abundance is dynamically regulated and how tRNAs (and their nucleolytic fragments) are centrally involved in stress signalling and adaptive translation, operating across a wide range of timescales. Mutations in tRNAs or in genes affecting tRNA biogenesis are also linked to complex human diseases with surprising heterogeneity in tissue vulnerability, and we highlight cell-specific aspects that modulate the disease penetrance of tRNA-based pathologies.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25534324     DOI: 10.1038/nrg3861

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  158 in total

1.  tRNA genes in eukaryotic genome organization and reorganization.

Authors:  Ramsay J McFarlane; Simon K Whitehall
Journal:  Cell Cycle       Date:  2009-10-25       Impact factor: 4.534

Review 2.  tRNA's modifications bring order to gene expression.

Authors:  Estella M Gustilo; Franck Ap Vendeix; Paul F Agris
Journal:  Curr Opin Microbiol       Date:  2008-04-02       Impact factor: 7.934

Review 3.  Mitochondrial tRNA import and its consequences for mitochondrial translation.

Authors:  André Schneider
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 4.  A guide to genome engineering with programmable nucleases.

Authors:  Hyongbum Kim; Jin-Soo Kim
Journal:  Nat Rev Genet       Date:  2014-04-02       Impact factor: 53.242

5.  A mitochondrial tRNA anticodon swap associated with a muscle disease.

Authors:  C T Moraes; F Ciacci; E Bonilla; V Ionasescu; E A Schon; S DiMauro
Journal:  Nat Genet       Date:  1993-07       Impact factor: 38.330

6.  A disease-causing point mutation in human mitochondrial tRNAMet rsults in tRNA misfolding leading to defects in translational initiation and elongation.

Authors:  Christie N Jones; Christopher I Jones; William D Graham; Paul F Agris; Linda L Spremulli
Journal:  J Biol Chem       Date:  2008-10-03       Impact factor: 5.157

Review 7.  Translation matters: protein synthesis defects in inherited disease.

Authors:  Gert C Scheper; Marjo S van der Knaap; Christopher G Proud
Journal:  Nat Rev Genet       Date:  2007-07-31       Impact factor: 53.242

8.  TATA-Binding protein-TATA interaction is a key determinant of differential transcription of silkworm constitutive and silk gland-specific tRNA(Ala) genes.

Authors:  C Ouyang; M J Martinez; L S Young; K U Sprague
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

9.  tRNA over-expression in breast cancer and functional consequences.

Authors:  Mariana Pavon-Eternod; Suzanna Gomes; Renaud Geslain; Qing Dai; Marsha Rich Rosner; Tao Pan
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

10.  5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.

Authors:  Joseph M Dhahbi; Stephen R Spindler; Hani Atamna; Amy Yamakawa; Dario Boffelli; Patricia Mote; David I K Martin
Journal:  BMC Genomics       Date:  2013-05-02       Impact factor: 3.969

View more
  204 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

2.  Rectifying RNA splicing errors in hereditary neurodegenerative disease.

Authors:  Maurice S Swanson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

3.  PUS7 mutations impair pseudouridylation in humans and cause intellectual disability and microcephaly.

Authors:  Ranad Shaheen; Monika Tasak; Sateesh Maddirevula; Ghada M H Abdel-Salam; Inas S M Sayed; Anas M Alazami; Tarfa Al-Sheddi; Eman Alobeid; Eric M Phizicky; Fowzan S Alkuraya
Journal:  Hum Genet       Date:  2019-02-18       Impact factor: 4.132

4.  Differential expression of human tRNA genes drives the abundance of tRNA-derived fragments.

Authors:  Adrian Gabriel Torres; Oscar Reina; Camille Stephan-Otto Attolini; Lluís Ribas de Pouplana
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-08       Impact factor: 11.205

5.  Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification.

Authors:  Jessica M Warren; Thalia Salinas-Giegé; Guillaume Hummel; Nicole L Coots; Joshua M Svendsen; Kristen C Brown; Laurence Drouard; Daniel B Sloan
Journal:  RNA Biol       Date:  2020-07-25       Impact factor: 4.652

6.  Codon Resolution Analysis of Ribosome Profiling Data.

Authors:  Alexander Bartholomäus; Zoya Ignatova
Journal:  Methods Mol Biol       Date:  2021

Review 7.  Discrimination of Self and Non-Self Ribonucleic Acids.

Authors:  Anna Gebhardt; Beatrice T Laudenbach; Andreas Pichlmair
Journal:  J Interferon Cytokine Res       Date:  2017-05       Impact factor: 2.607

8.  Reversible RNA modifications in meiosis and pluripotency.

Authors:  Arne Klungland; John Arne Dahl; Gareth Greggains; Peter Fedorcsak; Adam Filipczyk
Journal:  Nat Methods       Date:  2016-12-29       Impact factor: 28.547

Review 9.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

Review 10.  Epigenetic inheritance of acquired traits through sperm RNAs and sperm RNA modifications.

Authors:  Qi Chen; Wei Yan; Enkui Duan
Journal:  Nat Rev Genet       Date:  2016-10-03       Impact factor: 53.242

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.