Literature DB >> 28032624

Reversible RNA modifications in meiosis and pluripotency.

Arne Klungland1,2,3, John Arne Dahl1, Gareth Greggains4, Peter Fedorcsak4, Adam Filipczyk1,3.   

Abstract

Post-transcriptional RNA modifications were discovered several decades ago, but the reversible nature of RNA modifications has only recently been discovered. Owing to technological advances, knowledge of epitranscriptomic marks and their writers, readers and erasers has recently advanced tremendously. Here we focus on the roles of the dynamic methylation and demethylation of internal adenosines in mRNA in germ cells and pluripotent stem cells.

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Year:  2016        PMID： 28032624     DOI： 10.1038/nmeth.4111

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  48 in total

1.  Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome.

Authors:  Xiaoyu Li; Xushen Xiong; Kun Wang; Lixia Wang; Xiaoting Shu; Shiqing Ma; Chengqi Yi
Journal:  Nat Chem Biol       Date:  2016-02-10       Impact factor: 15.040

2.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

3.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

4.  Methylated, blocked 5' termini of yeast mRNA.

Authors:  C E Sripati; Y Groner; J R Warner
Journal:  J Biol Chem       Date:  1976-05-25       Impact factor: 5.157

5.  Structure and thermodynamics of N6-methyladenosine in RNA: a spring-loaded base modification.

Authors:  Caroline Roost; Stephen R Lynch; Pedro J Batista; Kun Qu; Howard Y Chang; Eric T Kool
Journal:  J Am Chem Soc       Date:  2015-02-02       Impact factor: 15.419

6.  AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation.

Authors:  Rune Ougland; Chun-Mei Zhang; Aivar Liiv; Rune F Johansen; Erling Seeberg; Ya-Ming Hou; Jaanus Remme; Pål Ø Falnes
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

7.  ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.

Authors:  Guanqun Zheng; John Arne Dahl; Yamei Niu; Peter Fedorcsak; Chun-Min Huang; Charles J Li; Cathrine B Vågbø; Yue Shi; Wen-Ling Wang; Shu-Hui Song; Zhike Lu; Ralph P G Bosmans; Qing Dai; Ya-Juan Hao; Xin Yang; Wen-Ming Zhao; Wei-Min Tong; Xiu-Jie Wang; Florian Bogdan; Kari Furu; Ye Fu; Guifang Jia; Xu Zhao; Jun Liu; Hans E Krokan; Arne Klungland; Yun-Gui Yang; Chuan He
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

8.  N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.

Authors:  Guifang Jia; Ye Fu; Xu Zhao; Qing Dai; Guanqun Zheng; Ying Yang; Chengqi Yi; Tomas Lindahl; Tao Pan; Yun-Gui Yang; Chuan He
Journal:  Nat Chem Biol       Date:  2011-10-16       Impact factor: 15.040

9.  High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.

Authors:  Schraga Schwartz; Sudeep D Agarwala; Maxwell R Mumbach; Marko Jovanovic; Philipp Mertins; Alexander Shishkin; Yuval Tabach; Tarjei S Mikkelsen; Rahul Satija; Gary Ruvkun; Steven A Carr; Eric S Lander; Gerald R Fink; Aviv Regev
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

10.  N6-methyladenosine-dependent regulation of messenger RNA stability.

Authors:  Xiao Wang; Zhike Lu; Adrian Gomez; Gary C Hon; Yanan Yue; Dali Han; Ye Fu; Marc Parisien; Qing Dai; Guifang Jia; Bing Ren; Tao Pan; Chuan He
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962
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  12 in total

Review 1.  Discovering and Mapping the Modified Nucleotides That Comprise the Epitranscriptome of mRNA.

Authors:  Bastian Linder; Samie R Jaffrey
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

2.  ALKBH5-dependent m6A demethylation controls splicing and stability of long 3'-UTR mRNAs in male germ cells.

Authors:  Chong Tang; Rachel Klukovich; Hongying Peng; Zhuqing Wang; Tian Yu; Ying Zhang; Huili Zheng; Arne Klungland; Wei Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-26       Impact factor: 11.205

3.  Aging-Associated Differences in Epitranscriptomic m6A Regulation in Response to Acute Cardiac Ischemia/Reperfusion Injury in Female Mice.

Authors:  Xuan Su; Yan Shen; Yue Jin; Il-Man Kim; Neal L Weintraub; Yaoliang Tang
Journal:  Front Pharmacol       Date:  2021-08-03       Impact factor: 5.810

Review 4.  m6A RNA Methylation Controls Neural Development and Is Involved in Human Diseases.

Authors:  Kunzhao Du; Longbin Zhang; Trevor Lee; Tao Sun
Journal:  Mol Neurobiol       Date:  2018-06-16       Impact factor: 5.590

5.  RNA Methylation in ncRNA: Classes, Detection, and Molecular Associations.

Authors:  Giulia Romano; Dario Veneziano; Giovanni Nigita; Serge P Nana-Sinkam
Journal:  Front Genet       Date:  2018-07-12       Impact factor: 4.599

Review 6.  "Too much guts and not enough brains": (epi)genetic mechanisms and future therapies of Hirschsprung disease - a review.

Authors:  Emilie G Jaroy; Lourdes Acosta-Jimenez; Ryo Hotta; Allan M Goldstein; Ragnhild Emblem; Arne Klungland; Rune Ougland
Journal:  Clin Epigenetics       Date:  2019-09-13       Impact factor: 6.551

7.  N6-methyladenosine (m6A) depletion regulates pluripotency exit by activating signaling pathways in embryonic stem cells.

Authors:  Kang-Xuan Jin; Rujuan Zuo; Konstantinos Anastassiadis; Arne Klungland; Carsten Marr; Adam Filipczyk
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 11.205

8.  m6A Regulator-Mediated Methylation Modification Patterns and Tumor Microenvironment Cell-Infiltration Characterization in Head and Neck Cancer.

Authors:  Qinghui Yang; Feng Xu; Aiwen Jian; Hongmei Yu; Tao Ye; Weiqi Hu
Journal:  Front Cell Dev Biol       Date:  2022-02-07

9.  A fluorescent methylation-switchable probe for highly sensitive analysis of FTO N 6-methyladenosine demethylase activity in cells.

Authors:  Adeline Cheong; Joanne J A Low; Andrea Lim; Paul M Yen; Esther C Y Woon
Journal:  Chem Sci       Date:  2018-08-07       Impact factor: 9.825

10.  The Role of m6A/m-RNA Methylation in Stress Response Regulation.

Authors:  Mareen Engel; Carola Eggert; Paul M Kaplick; Matthias Eder; Simone Röh; Lisa Tietze; Christian Namendorf; Janine Arloth; Peter Weber; Monika Rex-Haffner; Shay Geula; Mira Jakovcevski; Jacob H Hanna; Dena Leshkowitz; Manfred Uhr; Carsten T Wotjak; Mathias V Schmidt; Jan M Deussing; Elisabeth B Binder; Alon Chen
Journal:  Neuron       Date:  2018-07-25       Impact factor: 17.173
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