Literature DB >> 25532951

Mechanisms of virus assembly.

Jason D Perlmutter1, Michael F Hagan.   

Abstract

Viruses are nanoscale entities containing a nucleic acid genome encased in a protein shell called a capsid and in some cases are surrounded by a lipid bilayer membrane. This review summarizes the physics that govern the processes by which capsids assemble within their host cells and in vitro. We describe the thermodynamics and kinetics for the assembly of protein subunits into icosahedral capsid shells and how these are modified in cases in which the capsid assembles around a nucleic acid or on a lipid bilayer. We present experimental and theoretical techniques used to characterize capsid assembly, and we highlight aspects of virus assembly that are likely to receive significant attention in the near future.

Entities:  

Keywords:  RNA packaging; capsid; kinetics; membrane; simulation; thermodynamics

Mesh:

Substances:

Year:  2014        PMID: 25532951      PMCID: PMC4382372          DOI: 10.1146/annurev-physchem-040214-121637

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  156 in total

Review 1.  Energies and pressures in viruses: contribution of nonspecific electrostatic interactions.

Authors:  Antonio Siber; Anže Lošdorfer Božič; Rudolf Podgornik
Journal:  Phys Chem Chem Phys       Date:  2011-12-06       Impact factor: 3.676

2.  Irreversible growth model for virus capsid assembly.

Authors:  Stephen D Hicks; C L Henley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-09-25

3.  Phase diagram of self-assembled viral capsid protein polymorphs.

Authors:  L Lavelle; M Gingery; M Phillips; W M Gelbart; C M Knobler; R D Cadena-Nava; J R Vega-Acosta; L A Pinedo-Torres; J Ruiz-Garcia
Journal:  J Phys Chem B       Date:  2009-03-26       Impact factor: 2.991

4.  Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells.

Authors:  P E Prevelige; D Thomas; J King
Journal:  Biophys J       Date:  1993-03       Impact factor: 4.033

5.  Full-length hepatitis B virus core protein packages viral and heterologous RNA with similarly high levels of cooperativity.

Authors:  J Zachary Porterfield; Mary Savari Dhason; Daniel D Loeb; Michael Nassal; Stephen J Stray; Adam Zlotnick
Journal:  J Virol       Date:  2010-04-28       Impact factor: 5.103

6.  Characterization of hepatitis B virus capsids by resistive-pulse sensing.

Authors:  Kaimeng Zhou; Lichun Li; Zhenning Tan; Adam Zlotnick; Stephen C Jacobson
Journal:  J Am Chem Soc       Date:  2011-01-25       Impact factor: 15.419

Review 7.  Membrane budding.

Authors:  James H Hurley; Evzen Boura; Lars-Anders Carlson; Bartosz Różycki
Journal:  Cell       Date:  2010-12-10       Impact factor: 41.582

8.  Mechanism of capsid assembly for an icosahedral plant virus.

Authors:  A Zlotnick; R Aldrich; J M Johnson; P Ceres; M J Young
Journal:  Virology       Date:  2000-11-25       Impact factor: 3.616

Review 9.  Subversion of the actin cytoskeleton during viral infection.

Authors:  Matthew P Taylor; Orkide O Koyuncu; Lynn W Enquist
Journal:  Nat Rev Microbiol       Date:  2011-04-27       Impact factor: 60.633

10.  Dual roles for an arginine-rich motif in specific genome recognition and localization of viral coat protein to RNA replication sites in flock house virus-infected cells.

Authors:  P Arno Venter; Dawn Marshall; Anette Schneemann
Journal:  J Virol       Date:  2009-01-21       Impact factor: 5.103

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  103 in total

1.  Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits.

Authors:  Justin Spiriti; Daniel M Zuckerman
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

2.  Characterization of Virus Capsids and Their Assembly Intermediates by Multicycle Resistive-Pulse Sensing with Four Pores in Series.

Authors:  Jinsheng Zhou; Panagiotis Kondylis; Daniel G Haywood; Zachary D Harms; Lye Siang Lee; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-05-29       Impact factor: 6.986

3.  Charge Detection Mass Spectrometry Identifies Preferred Non-Icosahedral Polymorphs in the Self-Assembly of Woodchuck Hepatitis Virus Capsids.

Authors:  Elizabeth E Pierson; David Z Keifer; Alexander A Kukreja; Joseph C-Y Wang; Adam Zlotnick; Martin F Jarrold
Journal:  J Mol Biol       Date:  2015-07-04       Impact factor: 5.469

4.  Assembly Reactions of Hepatitis B Capsid Protein into Capsid Nanoparticles Follow a Narrow Path through a Complex Reaction Landscape.

Authors:  Roi Asor; Lisa Selzer; Christopher John Schlicksup; Zhongchao Zhao; Adam Zlotnick; Uri Raviv
Journal:  ACS Nano       Date:  2019-06-25       Impact factor: 15.881

5.  Primitive selection of the fittest emerging through functional synergy in nucleopeptide networks.

Authors:  Anil Kumar Bandela; Nathaniel Wagner; Hava Sadihov; Sara Morales-Reina; Agata Chotera-Ouda; Kingshuk Basu; Rivka Cohen-Luria; Andrés de la Escosura; Gonen Ashkenasy
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

6.  Beyond icosahedral symmetry in packings of proteins in spherical shells.

Authors:  Majid Mosayebi; Deborah K Shoemark; Jordan M Fletcher; Richard B Sessions; Noah Linden; Derek N Woolfson; Tanniemola B Liverpool
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-08       Impact factor: 11.205

7.  Robust nonequilibrium pathways to microcompartment assembly.

Authors:  Grant M Rotskoff; Phillip L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-04       Impact factor: 11.205

8.  Electrostatics-Driven Inflation of Elastic Icosahedral Shells as a Model for Swelling of Viruses.

Authors:  Anže Lošdorfer Božič; Antonio Šiber
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

9.  Local Stabilization of Subunit-Subunit Contacts Causes Global Destabilization of Hepatitis B Virus Capsids.

Authors:  Christopher John Schlicksup; Patrick Laughlin; Steven Dunkelbarger; Joseph Che-Yen Wang; Adam Zlotnick
Journal:  ACS Chem Biol       Date:  2020-05-19       Impact factor: 5.100

10.  Pseudo-typed Semliki Forest virus delivers EGFP into neurons.

Authors:  Fan Jia; Huan Miao; Xutao Zhu; Fuqiang Xu
Journal:  J Neurovirol       Date:  2016-10-13       Impact factor: 2.643

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