Literature DB >> 29866851

Robust nonequilibrium pathways to microcompartment assembly.

Grant M Rotskoff1,2, Phillip L Geissler3.   

Abstract

Cyanobacteria sequester photosynthetic enzymes into microcompartments which facilitate the conversion of carbon dioxide into sugars. Geometric similarities between these structures and self-assembling viral capsids have inspired models that posit microcompartments as stable equilibrium arrangements of the constituent proteins. Here we describe a different mechanism for microcompartment assembly, one that is fundamentally nonequilibrium and yet highly reliable. This pathway is revealed by simulations of a molecular model resolving the size and shape of a cargo droplet and the extent and topography of an elastic shell. The resulting metastable microcompartment structures closely resemble those of carboxysomes, with a narrow size distribution and faceted shells. The essence of their assembly dynamics can be understood from a simpler mathematical model that combines elements of classical nucleation theory with continuum elasticity. These results highlight important control variables for achieving nanoscale encapsulation in general and for modulating the size and shape of carboxysomes in particular.

Entities:  

Keywords:  carboxysome; nonequilibrium dynamics; self-assembly

Mesh:

Substances:

Year:  2018        PMID: 29866851      PMCID: PMC6016822          DOI: 10.1073/pnas.1802499115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Authors:  K Stratford; R Adhikari; I Pagonabarraga; J-C Desplat; M E Cates
Journal:  Science       Date:  2005-09-30       Impact factor: 47.728

2.  Irreversible growth model for virus capsid assembly.

Authors:  Stephen D Hicks; C L Henley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-09-25

3.  Biogenesis of a bacterial organelle: the carboxysome assembly pathway.

Authors:  Jeffrey C Cameron; Steven C Wilson; Susan L Bernstein; Cheryl A Kerfeld
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

Review 4.  Engineering carbon fixation with artificial protein organelles.

Authors:  Tobias W Giessen; Pamela A Silver
Journal:  Curr Opin Biotechnol       Date:  2017-01-23       Impact factor: 9.740

5.  Assembly of robust bacterial microcompartment shells using building blocks from an organelle of unknown function.

Authors:  Jonathan K Lassila; Susan L Bernstein; James N Kinney; Seth D Axen; Cheryl A Kerfeld
Journal:  J Mol Biol       Date:  2014-03-11       Impact factor: 5.469

6.  Engineering bacterial microcompartment shells: chimeric shell proteins and chimeric carboxysome shells.

Authors:  Fei Cai; Markus Sutter; Susan L Bernstein; James N Kinney; Cheryl A Kerfeld
Journal:  ACS Synth Biol       Date:  2014-08-27       Impact factor: 5.110

7.  Bottom-up Construction of a Primordial Carboxysome Mimic.

Authors:  Raphael Frey; Shiksha Mantri; Marco Rocca; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2016-08-08       Impact factor: 15.419

Review 8.  Building Spatial Synthetic Biology with Compartments, Scaffolds, and Communities.

Authors:  Jessica K Polka; Stephanie G Hays; Pamela A Silver
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-08-01       Impact factor: 10.005

9.  Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species.

Authors:  Balaraj B Menon; Zhicheng Dou; Sabine Heinhorst; Jessup M Shively; Gordon C Cannon
Journal:  PLoS One       Date:  2008-10-30       Impact factor: 3.240

10.  Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy.

Authors:  Markus Sutter; Matthew Faulkner; Clément Aussignargues; Bradley C Paasch; Steve Barrett; Cheryl A Kerfeld; Lu-Ning Liu
Journal:  Nano Lett       Date:  2015-12-07       Impact factor: 11.189

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  11 in total

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Authors:  Cecilia Blikstad; Avi I Flamholz; Luke M Oltrogge; David F Savage
Journal:  Biochemistry       Date:  2019-04-10       Impact factor: 3.162

2.  Bacterial metabolosomes: new insights into their structure and bioengineering.

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Authors:  Katie L Stewart; Andrew M Stewart; Thomas A Bobik
Journal:  EcoSal Plus       Date:  2020-10

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Authors:  Thomas E Videbæk; Huang Fang; Daichi Hayakawa; Botond Tyukodi; Michael F Hagan; W Benjamin Rogers
Journal:  J Phys Condens Matter       Date:  2022-01-14       Impact factor: 2.333

5.  Microcompartment assembly around multicomponent fluid cargoes.

Authors:  Lev Tsidilkovski; Farzaneh Mohajerani; Michael F Hagan
Journal:  J Chem Phys       Date:  2022-06-28       Impact factor: 4.304

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Journal:  ACS Nano       Date:  2020-04-02       Impact factor: 15.881

7.  The role of the encapsulated cargo in microcompartment assembly.

Authors:  Farzaneh Mohajerani; Michael F Hagan
Journal:  PLoS Comput Biol       Date:  2018-07-31       Impact factor: 4.475

8.  Computational and Experimental Approaches to Controlling Bacterial Microcompartment Assembly.

Authors:  Yaohua Li; Nolan W Kennedy; Siyu Li; Carolyn E Mills; Danielle Tullman-Ercek; Monica Olvera de la Cruz
Journal:  ACS Cent Sci       Date:  2021-04-13       Impact factor: 14.553

9.  A Weak Link with Actin Organizes Tight Junctions to Control Epithelial Permeability.

Authors:  Brian Belardi; Tiama Hamkins-Indik; Andrew R Harris; Jeongmin Kim; Ke Xu; Daniel A Fletcher
Journal:  Dev Cell       Date:  2020-08-24       Impact factor: 12.270

10.  Mechanisms of Scaffold-Mediated Microcompartment Assembly and Size Control.

Authors:  Farzaneh Mohajerani; Evan Sayer; Christopher Neil; Koe Inlow; Michael F Hagan
Journal:  ACS Nano       Date:  2021-03-08       Impact factor: 15.881

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