Literature DB >> 31612310

Single nucleotide polymorphisms in piRNA-pathway genes: an insight into genetic determinants of human diseases.

Jyoti Roy1, Kalyani Anand2, Swati Mohapatra1,3, Rojalin Nayak1, Trisha Chattopadhyay1, Bibekanand Mallick4.   

Abstract

With the development of advanced high-throughput genotyping technologies, there has been a dramatic improvement in identifying millions of single nucleotide polymorphisms (SNPs) across the human genome. SNPs located within the genes involved in biogenesis and function of small regulatory RNAs such as PIWI-interacting RNAs (piRNAs) can alter physiological processes by affecting gene expression. The genetic variations within PIWI genes and their associated factors such as TDRDs, EIFs, and KIF17 etc. have shown significant association with dreadful human diseases such as Alzheimer's disease, cancer, and schizophrenia. In this review, we have attempted to survey and summarize the association of all the genetic variants reported in different piRNA-pathway genes with diseases and discern their potential in clinical manifestations which will serve as a cornerstone for subsequent studies to decrypt the molecular mechanisms of SNPs in developing diseases.

Entities:  

Keywords:  Diseases; Genetic variation; PIWIL; SNPs; piRNA

Mesh:

Substances:

Year:  2019        PMID: 31612310     DOI: 10.1007/s00438-019-01612-5

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  86 in total

1.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

2.  The Catalogue of Somatic Mutations in Cancer (COSMIC).

Authors:  S A Forbes; G Bhamra; S Bamford; E Dawson; C Kok; J Clements; A Menzies; J W Teague; P A Futreal; M R Stratton
Journal:  Curr Protoc Hum Genet       Date:  2008-04

3.  Association of MOV10L1 gene polymorphisms and male infertility in azoospermic men with complete maturation arrest.

Authors:  Homa Sarkardeh; Mehdi Totonchi; Ommolbanin Asadpour; Mohammad Ali Sadighi Gilani; Masoud Zamani Esteki; Navid Almadani; Parnaz Borjian Boroujeni; Hamid Gourabi
Journal:  J Assist Reprod Genet       Date:  2014-05-10       Impact factor: 3.412

4.  Genome-wide pathway analysis of a genome-wide association study on Alzheimer's disease.

Authors:  Young Ho Lee; Gwan Gyu Song
Journal:  Neurol Sci       Date:  2014-07-19       Impact factor: 3.307

5.  Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members.

Authors:  Vasily V Vagin; James Wohlschlegel; Jun Qu; Zophonias Jonsson; Xinhua Huang; Shinichiro Chuma; Angelique Girard; Ravi Sachidanandam; Gregory J Hannon; Alexei A Aravin
Journal:  Genes Dev       Date:  2009-07-07       Impact factor: 11.361

6.  Evidence implicating BRD1 with brain development and susceptibility to both schizophrenia and bipolar affective disorder.

Authors:  J E Severinsen; C R Bjarkam; S Kiaer-Larsen; I M Olsen; M M Nielsen; J Blechingberg; A L Nielsen; I E Holm; L Foldager; B D Young; W J Muir; D H R Blackwood; T J Corydon; O Mors; A D Børglum
Journal:  Mol Psychiatry       Date:  2006-08-22       Impact factor: 15.992

7.  Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer.

Authors:  Lijuan Li; Ruifen Sun; Yundan Liang; Xinmin Pan; Zhaohui Li; Peng Bai; Xiaofeng Zeng; Dongxian Zhang; Lin Zhang; Linbo Gao
Journal:  J Exp Clin Cancer Res       Date:  2013-12-13

8.  The SNPcurator: literature mining of enriched SNP-disease associations.

Authors:  Noha S Tawfik; Marco R Spruit
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

9.  Phosphorylation of mRNA decapping protein Dcp1a by the ERK signaling pathway during early differentiation of 3T3-L1 preadipocytes.

Authors:  Pei-Yu Chiang; Yu-Fang Shen; Yu-Lun Su; Ching-Han Kao; Nien-Yi Lin; Pang-Hung Hsu; Ming-Daw Tsai; Shun-Chang Wang; Geen-Dong Chang; Sheng-Chung Lee; Ching-Jin Chang
Journal:  PLoS One       Date:  2013-04-18       Impact factor: 3.240

10.  Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.

Authors:  Eric L Brown; Jennifer E Below; Rebecca S B Fischer; Heather T Essigmann; Hao Hu; Chad Huff; D Ashley Robinson; Lauren E Petty; David Aguilar; Graeme I Bell; Craig L Hanis
Journal:  PLoS One       Date:  2015-11-16       Impact factor: 3.240

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  3 in total

Review 1.  Emerging roles and functional mechanisms of PIWI-interacting RNAs.

Authors:  Xin Wang; Anne Ramat; Martine Simonelig; Mo-Fang Liu
Journal:  Nat Rev Mol Cell Biol       Date:  2022-09-14       Impact factor: 113.915

2.  Effect of ovarian stimulation on the expression of piRNA pathway proteins.

Authors:  Ismail Sari; Erkan Gumus; Ahmet Sevki Taskiran; Lale Karakoc Sokmensuer
Journal:  PLoS One       Date:  2020-05-04       Impact factor: 3.240

Review 3.  The gene regulatory role of non-coding RNAs in non-obstructive azoospermia.

Authors:  Guanqing Zhou; Mimi Zhang; Jingzhi Zhang; Yaofeng Feng; Zhishen Xie; Siyi Liu; Detu Zhu; Yumei Luo
Journal:  Front Endocrinol (Lausanne)       Date:  2022-08-18       Impact factor: 6.055

  3 in total

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