Literature DB >> 25484814

Crystal structure of iso-butyl-ammonium hydrogen oxalate hemihydrate.

Błażej Dziuk1, Bartosz Zarychta1, Krzysztof Ejsmont1.   

Abstract

In the title hydrated mol-ecular salt, C4H12N(+)·C2HO4 (-)·0.5H2O, the O atom of the water mol-ecule lies on a crystallographic twofold axis. The dihedral angle between the CO2 and CO2H planes of the anion is 18.47 (8)°. In the crystal, the anions are connected to each other by strong near-linear O-H⋯O hydrogen bonds. The water mol-ecules are located between the chains of anions and iso-butyl-amine cations; their O atoms participate as donors and acceptors, respectively, in O-H⋯O and N-H⋯O hydrogen bonds, which form channels (dimensions = 4.615 and 3.387 Å) arranged parallel to [010].

Entities:  

Keywords:  crystal structure; hydrated mol­ecular salt; hydrogen bonding; iso­butyl­ammonium hydrogen oxalate hemihydrate; materials engineering

Year:  2014        PMID: 25484814      PMCID: PMC4257255          DOI: 10.1107/S1600536814022697

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Structure versus properties research is an important area in material engineering, see: Desiraju (2010 ▶, 2013 ▶). For the crystal structures of oxalic acid salts with aliphatic amines, see: Dziuk et al. (2014a ▶,b ▶); Braga et al. (2012 ▶); Ejsmont (2006 ▶, 2007 ▶)); Ejsmont & Zaleski (2006a ▶,b ▶); MacDonald et al. (2001 ▶). For the characteristic structural motifs in ammonium di­carboxyl­ate salts, see: Ali et al. (2012 ▶). For motifs of hydrogen bonds containing carboxylate anions, see: Rodríguez-Cuamatzi et al. (2005 ▶).

Experimental

Crystal data

2C4H12N+·2C2HO4 −·H2O M = 344.36 Monoclinic, a = 21.2425 (9) Å b = 5.6341 (1) Å c = 16.5372 (6) Å β = 119.141 (5)° V = 1728.69 (10) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.30 × 0.17 × 0.16 mm

Data collection

Oxford Diffraction Xcalibur diffractometer 5536 measured reflections 1696 independent reflections 1370 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.070 S = 1.03 1696 reflections 125 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.20 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814022697/hb7298sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022697/hb7298Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814022697/hb7298Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814022697/hb7298fig1.tif The mol­ecular structure of (I), showing 50% displacement ellipsoids (arbitrary spheres for the H atoms). Hydrogen bonds are shown as dotted lines. Click here for additional data file. b . DOI: 10.1107/S1600536814022697/hb7298fig2.tif The packing diagram of (I), viewed along the b axis, showing the inter­molecular hydrogen-bonding scheme (dashed lines). CCDC reference: 1029482 Additional supporting information: crystallographic information; 3D view; checkCIF report
2C4H12N+·2C2HO4·H2OF(000) = 744
Mr = 344.36Dx = 1.323 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1696 reflections
a = 21.2425 (9) Åθ = 3.8–26.0°
b = 5.6341 (1) ŵ = 0.11 mm1
c = 16.5372 (6) ÅT = 100 K
β = 119.141 (5)°Prism, colourless
V = 1728.69 (10) Å30.30 × 0.17 × 0.16 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer1370 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
Graphite monochromatorθmax = 26.0°, θmin = 3.8°
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1h = −26→26
ω scank = −5→6
5536 measured reflectionsl = −20→20
1696 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.070H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0414P)2 + 0.1361P] where P = (Fo2 + 2Fc2)/3
1696 reflections(Δ/σ)max < 0.001
125 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.06332 (5)−0.08724 (18)0.31560 (7)0.0152 (2)
H1A−0.0236 (8)0.019 (2)0.3483 (9)0.031 (4)*
H1B−0.0747 (8)−0.146 (2)0.3559 (10)0.030 (4)*
H1C−0.0464 (8)−0.208 (3)0.2919 (10)0.036 (4)*
C2−0.12455 (6)0.0404 (2)0.23817 (8)0.0165 (3)
H2A−0.10560.15040.21020.020*
H2B−0.15000.13190.26280.020*
C3−0.17707 (6)−0.1272 (2)0.16433 (8)0.0171 (3)
H3A−0.1503−0.22410.14210.021*
C4−0.23158 (7)0.0228 (2)0.08384 (9)0.0284 (3)
H4A−0.20660.12510.06250.043*
H4B−0.25890.11700.10410.043*
H4C−0.2635−0.07940.03430.043*
C5−0.21430 (7)−0.2922 (2)0.20040 (9)0.0247 (3)
H5A−0.1788−0.38420.25090.037*
H5B−0.2461−0.39660.15170.037*
H5C−0.2416−0.20020.22140.037*
C60.07522 (6)0.27767 (19)0.47629 (8)0.0119 (2)
C70.08118 (6)0.52879 (19)0.51722 (7)0.0119 (2)
O80.05406 (4)0.25554 (13)0.39204 (5)0.0149 (2)
O90.09169 (4)0.11123 (13)0.53399 (5)0.0180 (2)
O100.08298 (4)0.69868 (14)0.46405 (5)0.0155 (2)
H100.0884 (9)0.855 (3)0.4940 (12)0.057 (5)*
O110.08261 (4)0.55763 (14)0.59056 (5)0.0169 (2)
O120.00000.5785 (2)0.25000.0165 (3)
H120.0198 (9)0.486 (3)0.2967 (10)0.048 (5)*
U11U22U33U12U13U23
N10.0170 (5)0.0171 (5)0.0115 (5)−0.0011 (4)0.0070 (4)0.0001 (4)
C20.0180 (6)0.0156 (6)0.0159 (6)0.0012 (5)0.0082 (5)0.0039 (5)
C30.0170 (6)0.0213 (6)0.0130 (6)0.0028 (5)0.0073 (5)−0.0003 (5)
C40.0218 (7)0.0356 (8)0.0207 (7)0.0002 (6)0.0048 (6)0.0079 (6)
C50.0238 (7)0.0195 (7)0.0256 (7)−0.0044 (5)0.0080 (6)0.0005 (5)
C60.0120 (6)0.0123 (6)0.0127 (6)0.0000 (4)0.0072 (5)0.0004 (4)
C70.0098 (6)0.0131 (6)0.0117 (5)0.0001 (4)0.0043 (4)0.0010 (4)
O80.0216 (4)0.0129 (4)0.0110 (4)0.0002 (3)0.0087 (4)−0.0010 (3)
O90.0304 (5)0.0111 (4)0.0140 (4)0.0002 (3)0.0119 (4)0.0015 (3)
O100.0248 (5)0.0097 (4)0.0137 (4)−0.0006 (3)0.0107 (4)0.0008 (3)
O110.0252 (5)0.0156 (4)0.0119 (4)−0.0009 (3)0.0106 (4)−0.0016 (3)
O120.0227 (7)0.0142 (6)0.0103 (6)0.0000.0062 (5)0.000
N1—C21.4921 (14)C4—H4C0.9600
N1—H1A0.959 (15)C5—H5A0.9600
N1—H1B0.877 (15)C5—H5B0.9600
N1—H1C0.940 (15)C5—H5C0.9600
C2—C31.5167 (16)C6—O81.2445 (13)
C2—H2A0.9700C6—O91.2599 (13)
C2—H2B0.9700C6—C71.5468 (15)
C3—C51.5181 (17)C7—O111.2092 (13)
C3—C41.5249 (16)C7—O101.3128 (13)
C3—H3A0.9800O10—H100.988 (17)
C4—H4A0.9600O12—H120.853 (15)
C4—H4B0.9600
C2—N1—H1A110.0 (8)C3—C4—H4B109.5
C2—N1—H1B112.6 (9)H4A—C4—H4B109.5
H1A—N1—H1B107.4 (12)C3—C4—H4C109.5
C2—N1—H1C110.0 (9)H4A—C4—H4C109.5
H1A—N1—H1C106.2 (12)H4B—C4—H4C109.5
H1B—N1—H1C110.4 (12)C3—C5—H5A109.5
N1—C2—C3112.53 (9)C3—C5—H5B109.5
N1—C2—H2A109.1H5A—C5—H5B109.5
C3—C2—H2A109.1C3—C5—H5C109.5
N1—C2—H2B109.1H5A—C5—H5C109.5
C3—C2—H2B109.1H5B—C5—H5C109.5
H2A—C2—H2B107.8O8—C6—O9126.09 (10)
C2—C3—C5112.62 (9)O8—C6—C7119.31 (9)
C2—C3—C4107.83 (10)O9—C6—C7114.58 (9)
C5—C3—C4111.28 (10)O11—C7—O10125.39 (10)
C2—C3—H3A108.3O11—C7—C6121.24 (10)
C5—C3—H3A108.3O10—C7—C6113.37 (9)
C4—C3—H3A108.3C7—O10—H10110.3 (10)
C3—C4—H4A109.5
N1—C2—C3—C563.80 (13)O9—C6—C7—O11−18.47 (15)
N1—C2—C3—C4−173.04 (10)O8—C6—C7—O10−18.64 (14)
O8—C6—C7—O11160.16 (10)O9—C6—C7—O10162.72 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O80.959 (15)1.963 (15)2.9111 (13)169.2 (12)
N1—H1B···O9i0.877 (15)2.031 (15)2.8333 (13)151.7 (12)
N1—H1B···O11i0.877 (15)2.518 (14)3.1968 (13)134.8 (11)
N1—H1C···O12ii0.940 (15)1.887 (16)2.8202 (13)171.4 (13)
O12—H12···O80.853 (15)1.893 (15)2.7423 (10)173.0 (16)
O10—H10···O9iii0.988 (17)1.577 (17)2.5625 (11)175.3 (17)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1AO80.959(15)1.963(15)2.9111(13)169.2(12)
N1H1BO9i 0.877(15)2.031(15)2.8333(13)151.7(12)
N1H1BO11i 0.877(15)2.518(14)3.1968(13)134.8(11)
N1H1CO12ii 0.940(15)1.887(16)2.8202(13)171.4(13)
O12H12O80.853(15)1.893(15)2.7423(10)173.0(16)
O10H10O9iii 0.988(17)1.577(17)2.5625(11)175.3(17)

Symmetry codes: (i) ; (ii) ; (iii) .

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