Literature DB >> 22347031

Creatinium hydrogen oxalate.

A Jahubar Ali, S Athimoolam, S Asath Bahadur.   

Abstract

The crystal structure of the title compound, C(4)H(10)N(3)O(2) (+)·C(2)HO(4) (-), is stabilized by N-H⋯O and O-H⋯O hydrogen bonds. The anions are connected by an O-H⋯O hydrogen bond, leading to C(5) chain extending along c axis. The cations are dimerized around the corners of the unit cell, leading to an R(2) (2)(14) ring motif. This leads to a cationic mol-ecular aggregation at x = 0 or 1 and an anionic mol-ecular aggregation at x = 1/2.

Entities:  

Year:  2012        PMID: 22347031      PMCID: PMC3275175          DOI: 10.1107/S1600536812000852

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures see: Ali et al. (2011a ▶,b ▶); Bahadur, Kannan et al. (2007 ▶); Bahadur, Sivapragasam et al. (2007 ▶); Bahadur, Rajalakshmi et al. (2007 ▶). For hydrogen-bonding motifs, see Bernstein et al. (1995 ▶). For the biological importance of creatine, see: Cannan & Shore (1928 ▶); Greenhaff et al. (1993 ▶).

Experimental

Crystal data

C4H10N3O2 +·C2HO4 − M = 221.18 Monoclinic, a = 7.1545 (4) Å b = 12.3681 (7) Å c = 10.5151 (6) Å β = 94.18 (1)° V = 927.98 (9) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.24 × 0.22 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 8631 measured reflections 1641 independent reflections 1587 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.08 1641 reflections 162 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL/PC (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL/PC; molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812000852/hg5159sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000852/hg5159Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000852/hg5159Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10N3O2+·C2HO4F(000) = 464
Mr = 221.18Dx = 1.583 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3216 reflections
a = 7.1545 (4) Åθ = 2.1–24.7°
b = 12.3681 (7) ŵ = 0.14 mm1
c = 10.5151 (6) ÅT = 293 K
β = 94.18 (1)°Block, colourless
V = 927.98 (9) Å30.24 × 0.22 × 0.18 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer1587 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
graphiteθmax = 25.0°, θmin = 2.6°
ω scansh = −8→8
8631 measured reflectionsk = −14→14
1641 independent reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0629P)2 + 0.2614P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1641 reflectionsΔρmax = 0.25 e Å3
162 parametersΔρmin = −0.23 e Å3
1 restraintExtinction correction: SHELXTL/PC (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.040 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.83544 (18)1.03293 (11)0.10352 (12)0.0299 (3)
C20.92061 (19)1.05574 (11)0.23633 (13)0.0326 (3)
H2A1.05421.06710.23210.039*
H2B0.86761.12250.26610.039*
C30.7146 (2)0.97346 (13)0.38693 (16)0.0440 (4)
H3A0.68280.90150.41200.066*
H3B0.61901.00050.32640.066*
H3C0.72401.01950.46060.066*
C41.01280 (19)0.88981 (11)0.34586 (12)0.0316 (3)
N10.89312 (16)0.97171 (9)0.32919 (11)0.0323 (3)
N21.1567 (2)0.87994 (13)0.27569 (14)0.0482 (4)
N30.9923 (2)0.81801 (10)0.43697 (13)0.0403 (3)
O10.85571 (15)1.09547 (8)0.01761 (9)0.0385 (3)
O20.74475 (17)0.94241 (9)0.09369 (11)0.0460 (3)
H1N1.163 (4)0.912 (2)0.208 (3)0.083 (8)*
H2N1.238 (3)0.8321 (15)0.2955 (19)0.051 (5)*
H3N1.061 (3)0.7617 (18)0.4380 (19)0.053 (5)*
H4N0.914 (2)0.8210 (14)0.495 (2)0.056 (6)*
H20.705 (4)0.9278 (19)0.008 (3)0.084 (7)*
C110.56186 (18)0.81947 (11)0.82074 (12)0.0286 (3)
C120.58163 (18)0.79173 (11)0.67945 (12)0.0284 (3)
O110.45079 (14)0.76467 (9)0.87863 (8)0.0384 (3)
O120.66030 (19)0.89487 (11)0.86180 (11)0.0566 (4)
O130.43397 (14)0.74502 (9)0.62504 (9)0.0385 (3)
O140.72071 (16)0.81332 (10)0.62893 (10)0.0490 (4)
H13O0.449 (3)0.7329 (19)0.542 (2)0.071 (6)*
U11U22U33U12U13U23
C10.0297 (7)0.0292 (7)0.0313 (7)0.0010 (5)0.0054 (5)0.0002 (5)
C20.0375 (7)0.0294 (7)0.0306 (7)−0.0027 (5)0.0004 (5)0.0042 (5)
C30.0418 (8)0.0448 (9)0.0472 (9)0.0102 (7)0.0160 (7)0.0084 (7)
C40.0357 (7)0.0355 (7)0.0236 (6)0.0037 (6)0.0024 (5)−0.0009 (5)
N10.0341 (6)0.0333 (6)0.0303 (6)0.0037 (5)0.0064 (5)0.0058 (4)
N20.0442 (8)0.0637 (9)0.0384 (8)0.0205 (7)0.0147 (6)0.0151 (7)
N30.0507 (8)0.0353 (7)0.0364 (7)0.0121 (6)0.0128 (6)0.0077 (5)
O10.0498 (6)0.0348 (5)0.0308 (5)−0.0016 (4)0.0019 (4)0.0058 (4)
O20.0615 (7)0.0432 (6)0.0335 (6)−0.0218 (5)0.0044 (5)−0.0033 (5)
C110.0283 (6)0.0346 (7)0.0230 (6)0.0007 (5)0.0013 (5)−0.0007 (5)
C120.0317 (7)0.0304 (7)0.0237 (6)0.0000 (5)0.0045 (5)0.0012 (5)
O110.0429 (6)0.0515 (6)0.0215 (5)−0.0093 (5)0.0066 (4)−0.0017 (4)
O120.0687 (8)0.0683 (8)0.0339 (6)−0.0311 (7)0.0101 (5)−0.0161 (5)
O130.0363 (6)0.0575 (7)0.0220 (5)−0.0070 (5)0.0042 (4)−0.0083 (4)
O140.0447 (6)0.0712 (8)0.0330 (6)−0.0182 (5)0.0148 (5)−0.0060 (5)
C1—O11.2060 (17)C4—N11.3296 (18)
C1—O21.2943 (17)N2—H1N0.82 (3)
C1—C21.5090 (19)N2—H2N0.85 (2)
C2—N11.4493 (17)N3—H3N0.85 (2)
C2—H2A0.9700N3—H4N0.86 (2)
C2—H2B0.9700O2—H20.94 (3)
C3—N11.4540 (18)C11—O121.2279 (17)
C3—H3A0.9600C11—O111.2377 (17)
C3—H3B0.9600C11—C121.5413 (18)
C3—H3C0.9600C12—O141.1920 (17)
C4—N21.3152 (19)C12—O131.2996 (17)
C4—N31.3223 (19)O13—H13O0.90 (3)
O1—C1—O2125.59 (13)C4—N1—C2121.16 (12)
O1—C1—C2120.72 (12)C4—N1—C3122.23 (12)
O2—C1—C2113.69 (11)C2—N1—C3115.92 (11)
N1—C2—C1115.09 (11)C4—N2—H1N122.7 (19)
N1—C2—H2A108.5C4—N2—H2N118.7 (14)
C1—C2—H2A108.5H1N—N2—H2N118 (2)
N1—C2—H2B108.5C4—N3—H3N117.5 (14)
C1—C2—H2B108.5C4—N3—H4N126.7 (10)
H2A—C2—H2B107.5H3N—N3—H4N115.7 (17)
N1—C3—H3A109.5C1—O2—H2110.9 (15)
N1—C3—H3B109.5O12—C11—O11127.98 (12)
H3A—C3—H3B109.5O12—C11—C12114.67 (12)
N1—C3—H3C109.5O11—C11—C12117.35 (11)
H3A—C3—H3C109.5O14—C12—O13125.56 (12)
H3B—C3—H3C109.5O14—C12—C11121.20 (12)
N2—C4—N3118.47 (14)O13—C12—C11113.24 (11)
N2—C4—N1121.30 (13)C12—O13—H13O110.6 (15)
N3—C4—N1120.19 (13)
D—H···AD—HH···AD···AD—H···A
N2—H1N···O1i0.82 (3)2.37 (3)3.094 (2)148 (2)
N2—H2N···O11ii0.85 (2)2.08 (2)2.910 (2)168 (2)
N3—H3N···O1iii0.85 (2)2.18 (2)2.985 (2)157 (2)
N3—H4N···O140.86 (2)2.04 (2)2.903 (2)174 (2)
O2—H2···O12iv0.94 (3)1.60 (3)2.538 (2)173 (2)
O13—H13O···O11v0.90 (3)1.72 (3)2.605 (1)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N⋯O1i0.82 (3)2.37 (3)3.094 (2)148 (2)
N2—H2N⋯O11ii0.85 (2)2.08 (2)2.910 (2)168 (2)
N3—H3N⋯O1iii0.85 (2)2.18 (2)2.985 (2)157 (2)
N3—H4N⋯O140.86 (2)2.04 (2)2.903 (2)174 (2)
O2—H2⋯O12iv0.94 (3)1.60 (3)2.538 (2)173 (2)
O13—H13O⋯O11v0.90 (3)1.72 (3)2.605 (1)168 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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