Literature DB >> 25249903

Allyl-ammonium hydrogen oxalate hemihydrate.

Błażej Dziuk1, Bartosz Zarychta1, Krzysztof Ejsmont1.   

Abstract

In the title hydrated mol-ecular salt, C3H8N(+)·C2HO4 (-)·0.5H2O, the water O atom lies on a crystallographic twofold axis. The C=C-C-N torsion angle in the cation is 2.8 (3)° and the dihedral angle between the CO2 and CO2H planes in the anion is 1.0 (4)°. In the crystal, the hydrogen oxalate ions are linked by O-H⋯O hydrogen bonds, generating [010] chains. The allyl-ammonium cations bond to the chains through N-H⋯O and N-H⋯(O,O) hydrogen bonds. The water mol-ecule accepts two N-H⋯O hydrogen bonds and makes two O-H⋯O hydrogen bonds. Together, the hydrogen bonds generate (100) sheets.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25249903      PMCID: PMC4158551          DOI: 10.1107/S1600536814015190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of oxalic acid salts with aliphatic amines, see: Ejsmont (2006 ▶), (2007 ▶); Ejsmont & Zaleski (2006a ▶,b ▶); Vaidhyanathan et al. (2001 ▶, 2002 ▶); MacDonald et al. (2001 ▶) For information on the Cambridge Database, see: Allen (2002 ▶).

Experimental

Crystal data

C3H8N+·C2HO4 −·0.5H2O M = 156.14 Monoclinic, a = 21.578 (3) Å b = 5.6521 (4) Å c = 13.8629 (17) Å β = 118.415 (17)° V = 1487.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.33 × 0.18 × 0.14 mm

Data collection

Oxford Diffraction Xcalibur diffractometer 4525 measured reflections 1376 independent reflections 958 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.098 S = 0.90 1376 reflections 136 parameters All H-atom parameters refined Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED ; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814015190/hb7243sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015190/hb7243Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814015190/hb7243Isup3.cml CCDC reference: 1010915 Additional supporting information: crystallographic information; 3D view; checkCIF report
C3H8N+·C2HO4·0.5H2OF(000) = 664
Mr = 156.14Dx = 1.395 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4525 reflections
a = 21.578 (3) Åθ = 3.3–25.5°
b = 5.6521 (4) ŵ = 0.12 mm1
c = 13.8629 (17) ÅT = 100 K
β = 118.415 (17)°Prism, colourless
V = 1487.0 (3) Å30.33 × 0.18 × 0.14 mm
Z = 8
Oxford Diffraction Xcalibur diffractometer958 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.045
Graphite monochromatorθmax = 25.5°, θmin = 3.3°
Detector resolution: 1024 x 1024 with blocks 2 x 2 pixels mm-1h = −26→26
ω–scank = −6→5
4525 measured reflectionsl = −16→16
1376 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098All H-atom parameters refined
S = 0.90w = 1/[σ2(Fo2) + (0.0628P)2] where P = (Fo2 + 2Fc2)/3
1376 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.40092 (10)0.2394 (3)0.23240 (15)0.0196 (4)
H1A0.4411 (13)0.348 (4)0.2556 (19)0.033 (6)*
H1B0.4018 (14)0.132 (5)0.177 (2)0.050 (8)*
H1C0.4052 (14)0.154 (5)0.291 (2)0.046 (8)*
C20.33560 (12)0.3802 (4)0.18227 (19)0.0231 (5)
H2A0.3367 (11)0.466 (4)0.1271 (18)0.021 (5)*
H2B0.3376 (12)0.486 (4)0.233 (2)0.032 (6)*
C30.27053 (13)0.2364 (4)0.13940 (19)0.0284 (5)
H30.2311 (12)0.325 (4)0.1035 (18)0.026 (6)*
C40.26561 (15)0.0080 (5)0.1452 (2)0.0327 (6)
H4A0.2203 (14)−0.075 (4)0.111 (2)0.042 (7)*
H4B0.3053 (13)−0.085 (4)0.1769 (19)0.028 (6)*
C50.41682 (10)0.1591 (3)−0.03835 (16)0.0167 (5)
C60.41572 (10)−0.0892 (3)0.00740 (16)0.0177 (5)
O70.41788 (8)0.3311 (2)0.02573 (11)0.0211 (4)
H70.4173 (16)0.482 (6)−0.002 (3)0.077 (10)*
O80.41599 (8)0.1838 (2)−0.12581 (11)0.0228 (4)
O90.41549 (8)−0.1043 (2)0.09658 (11)0.0231 (4)
O100.41539 (8)−0.2570 (2)−0.05214 (11)0.0221 (4)
O110.50000.5720 (4)0.25000.0199 (5)
H110.5269 (14)0.672 (5)0.302 (2)0.055 (9)*
U11U22U33U12U13U23
N10.0289 (11)0.0222 (10)0.0119 (8)−0.0017 (8)0.0133 (8)0.0000 (8)
C20.0356 (13)0.0234 (12)0.0166 (11)0.0039 (10)0.0175 (10)0.0007 (10)
C30.0273 (14)0.0331 (14)0.0255 (12)0.0051 (11)0.0132 (11)0.0020 (10)
C40.0290 (14)0.0362 (15)0.0294 (13)−0.0024 (12)0.0110 (11)0.0021 (12)
C50.0189 (11)0.0201 (10)0.0113 (10)−0.0001 (8)0.0073 (8)−0.0027 (8)
C60.0202 (11)0.0194 (10)0.0136 (10)0.0009 (8)0.0082 (9)−0.0002 (8)
O70.0383 (9)0.0158 (7)0.0148 (7)−0.0003 (7)0.0172 (7)0.0003 (6)
O80.0394 (9)0.0224 (8)0.0128 (7)−0.0011 (6)0.0173 (7)0.0005 (6)
O90.0416 (9)0.0222 (8)0.0145 (8)0.0049 (6)0.0206 (7)0.0037 (6)
O100.0395 (9)0.0172 (7)0.0148 (7)−0.0003 (6)0.0170 (7)−0.0014 (6)
O110.0283 (12)0.0207 (11)0.0119 (10)0.0000.0107 (9)0.000
N1—C21.473 (3)C4—H4A0.98 (3)
N1—H1A0.98 (3)C4—H4B0.92 (2)
N1—H1B0.98 (3)C5—O81.212 (2)
N1—H1C0.91 (3)C5—O71.309 (2)
C2—C31.480 (3)C5—C61.545 (3)
C2—H2A0.92 (2)C6—O91.242 (2)
C2—H2B0.91 (2)C6—O101.255 (2)
C3—C41.301 (3)O7—H70.94 (3)
C3—H30.91 (2)O11—H110.88 (3)
C2—N1—H1A108.3 (13)C4—C3—H3120.1 (14)
C2—N1—H1B109.5 (15)C2—C3—H3112.3 (14)
H1A—N1—H1B108 (2)C3—C4—H4A122.4 (14)
C2—N1—H1C112.2 (17)C3—C4—H4B120.8 (14)
H1A—N1—H1C110 (2)H4A—C4—H4B116.6 (19)
H1B—N1—H1C109 (2)O8—C5—O7125.49 (18)
N1—C2—C3113.87 (18)O8—C5—C6121.27 (17)
N1—C2—H2A106.4 (13)O7—C5—C6113.24 (15)
C3—C2—H2A110.6 (13)O9—C6—O10126.98 (18)
N1—C2—H2B108.0 (14)O9—C6—C5118.63 (16)
C3—C2—H2B111.1 (15)O10—C6—C5114.39 (16)
H2A—C2—H2B106.5 (19)C5—O7—H7113.9 (19)
C4—C3—C2127.6 (2)
N1—C2—C3—C42.8 (3)O8—C5—C6—O101.4 (3)
O8—C5—C6—O9−178.8 (2)O7—C5—C6—O10−179.34 (17)
O7—C5—C6—O90.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O90.98 (3)1.86 (3)2.825 (2)169 (2)
N1—H1A···O110.98 (3)1.82 (3)2.769 (2)161 (2)
N1—H1C···O8i0.91 (3)2.19 (3)3.014 (2)151 (2)
N1—H1C···O10i0.91 (3)2.16 (3)2.853 (2)132 (2)
O7—H7···O10ii0.94 (3)1.62 (3)2.5563 (19)179 (4)
O11—H11···O9iii0.88 (3)1.86 (3)2.739 (2)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1B⋯O90.98 (3)1.86 (3)2.825 (2)169 (2)
N1—H1A⋯O110.98 (3)1.82 (3)2.769 (2)161 (2)
N1—H1C⋯O8i 0.91 (3)2.19 (3)3.014 (2)151 (2)
N1—H1C⋯O10i 0.91 (3)2.16 (3)2.853 (2)132 (2)
O7—H7⋯O10ii 0.94 (3)1.62 (3)2.5563 (19)179 (4)
O11—H11⋯O9iii 0.88 (3)1.86 (3)2.739 (2)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  2 in total

1.  Crystal structure of bis-(allyl-ammonium) oxalate.

Authors:  Błażej Dziuk; Bartosz Zarychta; Krzysztof Ejsmont
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-05

2.  Crystal structure of iso-butyl-ammonium hydrogen oxalate hemihydrate.

Authors:  Błażej Dziuk; Bartosz Zarychta; Krzysztof Ejsmont
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-24
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.