Literature DB >> 25309251

Crystal structure of allyl-ammonium hydrogen succinate at 100 K.

Błażej Dziuk1, Bartosz Zarychta1, Krzysztof Ejsmont1.   

Abstract

The asymmetric unit of the title compound, C2H8N(+)·C4H5O4 (-), consists of two allyl-ammonium cations and two hydrogen succinate anions (Z' = 2). One of the cations has a near-perfect syn-periplanar (cis) conformation with an N-C-C-C torsion angle of 0.4 (3)°, while the other is characterized by a gauche conformation and a torsion angle of 102.5 (3)°. Regarding the anions, three out of four carboxilic groups are twisted with respect to the central C-CH2-CH2-C group [dihedral angles = 24.4 (2), 31.2 (2) and 40.4 (2)°], the remaining one being instead almost coplanar, with a dihedral angle of 4.0 (2)°. In the crystal, there are two very short, near linear O-H⋯O hydrogen bonds between anions, with the H atoms shifted notably from the donor O towards the O⋯O midpoint. These O-H⋯O hydrogen bonds form helical chains along the [011] which are further linked to each other through N-H⋯O hydrogen bonds (involving all the available NH groups), forming layers lying parallel to (100).

Entities:  

Keywords:  allyl­ammonium; crystal structure; hydrogen bonds; succinate

Year:  2014        PMID: 25309251      PMCID: PMC4186065          DOI: 10.1107/S1600536814015633

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other crystal structures of succinate salts with amines, see: Bhardwaj et al. (2013 ▶); Bruni et al. (2013 ▶); Khorasani & Fernandes (2012 ▶). For the characteristic structural motifs in ammonium di­carboxyl­ate salts, see: Kashino et al. (1998 ▶); Barnes & Weakley (2000 ▶); MacDonald et al. (2001 ▶); Vaidhyanathan et al. (2001 ▶, 2002 ▶); Saraswathi & Vijayan (2002 ▶); Ejsmont (2007 ▶). Salts of succinic acid and amines have strong N—H⋯O and O—H⋯O hydrogen bonds and are thus used as building blocks for the construction of supra­molecular structures, see: Khorasani et al. (2012 ▶); Lemmerer (2011 ▶). For hydrogen bonding, see: Steiner (2002 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C3H8NC4H5O4 M = 175.19 Triclinic, a = 8.5649 (3) Å b = 9.4364 (3) Å c = 10.8051 (4) Å α = 88.838 (3)° β = 87.482 (3)° γ = 82.843 (3)° V = 865.55 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.30 × 0.20 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur diffractometer 5454 measured reflections 3013 independent reflections 2373 reflections with I > 2σI) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.093 S = 1.10 3013 reflections 249 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.50 e Å−3

Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814015633/bg2532sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015633/bg2532Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814015633/bg2532Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814015633/bg2532fig1.tif The mol­ecular structure of (I), showing 50% displacement ellipsoids. Hydrogen bonds are shown as dotted lines. Click here for additional data file. b . DOI: 10.1107/S1600536814015633/bg2532fig2.tif Packing diagram of (I) viewed along the b axis, showing (sideways) the (100) 2D structure defined by the hydrogen-bonding network (dotted lines). CCDC reference: 1012134 Additional supporting information: crystallographic information; 3D view; checkCIF report
C3H8N+·C4H5O4Z = 4
Mr = 175.19F(000) = 376
Triclinic, P1Dx = 1.344 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5649 (3) ÅCell parameters from 5943 reflections
b = 9.4364 (3) Åθ = 2.9–26.0°
c = 10.8051 (4) ŵ = 0.11 mm1
α = 88.838 (3)°T = 100 K
β = 87.482 (3)°Prism, colourless
γ = 82.843 (3)°0.30 × 0.20 × 0.15 mm
V = 865.55 (5) Å3
Oxford Diffraction Xcalibur diffractometer2373 reflections with I > 2σI)
Radiation source: fine-focus sealed tubeRint = 0.014
Graphite monochromatorθmax = 25.0°, θmin = 2.9°
ω–scanh = −10→10
5454 measured reflectionsk = −11→11
3013 independent reflectionsl = −8→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0483P)2 + 0.1223P] where P = (Fo2 + 2Fc2)/3
3013 reflections(Δ/σ)max < 0.001
249 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N110.22162 (17)0.36564 (17)0.68154 (14)0.0143 (3)
H11A0.240 (2)0.444 (2)0.7297 (18)0.022 (5)*
H11B0.263 (2)0.387 (2)0.601 (2)0.026 (5)*
H11C0.275 (3)0.284 (2)0.711 (2)0.035 (6)*
C120.0522 (2)0.34987 (19)0.67065 (15)0.0171 (4)
H12A0.04400.26160.62840.021*
H12B0.00410.42790.61990.021*
C13−0.0375 (2)0.34861 (19)0.79193 (16)0.0195 (4)
H13−0.14410.33960.78900.023*
C140.0178 (2)0.35885 (19)0.90250 (16)0.0213 (4)
H14A0.12360.36810.91070.026*
H14B−0.04910.35690.97260.026*
N210.72616 (18)0.81019 (17)0.70187 (15)0.0163 (3)
H21A0.670 (3)0.729 (3)0.699 (2)0.053 (7)*
H21B0.675 (2)0.880 (2)0.7549 (18)0.023 (5)*
H21C0.734 (3)0.847 (2)0.623 (2)0.037 (6)*
C220.8872 (2)0.7596 (2)0.74249 (19)0.0266 (5)
H22A0.93560.68390.68880.032*
H22B0.88130.72130.82630.032*
C230.9854 (3)0.8799 (3)0.7381 (3)0.0480 (7)
H231.02300.90370.65930.058*
C241.0244 (3)0.9520 (3)0.8213 (3)0.0649 (9)
H24A0.99150.93470.90280.078*
H24B1.08691.02410.80330.078*
O310.56273 (14)0.40484 (12)0.67627 (10)0.0164 (3)
O320.70239 (14)0.54666 (12)0.56148 (10)0.0167 (3)
C330.64907 (19)0.43020 (17)0.58151 (15)0.0129 (4)
C340.6844 (2)0.31171 (17)0.48796 (15)0.0156 (4)
H34A0.61390.33150.42020.019*
H34B0.79110.31270.45430.019*
C350.6679 (2)0.16362 (18)0.53950 (16)0.0195 (4)
H35A0.75120.13690.59660.023*
H35B0.56830.16700.58640.023*
C360.6745 (2)0.04877 (18)0.44309 (15)0.0142 (4)
O370.60445 (14)0.08573 (12)0.34227 (10)0.0178 (3)
H370.614 (3)−0.012 (3)0.275 (2)0.060 (7)*
O380.73921 (15)−0.07378 (12)0.46355 (11)0.0199 (3)
O410.62286 (14)0.88262 (12)1.20228 (10)0.0168 (3)
O420.39008 (14)0.97603 (12)1.13231 (10)0.0177 (3)
C430.5051 (2)0.88300 (18)1.13021 (14)0.0135 (4)
C440.5199 (2)0.76104 (17)1.04077 (15)0.0153 (4)
H44A0.53670.67171.08710.018*
H44B0.61180.76680.98600.018*
C450.3767 (2)0.75980 (18)0.96308 (15)0.0159 (4)
H45A0.28540.75211.01810.019*
H45B0.35860.85030.91860.019*
C460.3904 (2)0.64079 (18)0.87107 (15)0.0145 (4)
O470.53341 (14)0.60086 (13)0.82691 (11)0.0182 (3)
H470.543 (3)0.518 (3)0.758 (3)0.084 (10)*
O480.27396 (14)0.58861 (13)0.83964 (11)0.0193 (3)
U11U22U33U12U13U23
N110.0163 (8)0.0133 (8)0.0138 (8)−0.0028 (6)−0.0011 (6)−0.0018 (6)
C120.0158 (9)0.0179 (9)0.0181 (9)−0.0025 (7)−0.0045 (7)−0.0022 (7)
C130.0149 (9)0.0204 (10)0.0235 (10)−0.0042 (7)0.0008 (8)−0.0010 (8)
C140.0201 (10)0.0238 (10)0.0211 (10)−0.0081 (8)0.0034 (8)0.0000 (8)
N210.0194 (8)0.0115 (8)0.0177 (8)−0.0008 (7)−0.0016 (7)−0.0008 (7)
C220.0207 (10)0.0257 (11)0.0321 (11)0.0027 (8)−0.0028 (8)0.0018 (9)
C230.0229 (12)0.0636 (17)0.0608 (16)−0.0184 (12)0.0116 (11)−0.0269 (14)
C240.0543 (18)0.0384 (16)0.104 (2)−0.0198 (13)0.0227 (17)−0.0188 (16)
O310.0208 (7)0.0143 (6)0.0147 (6)−0.0052 (5)0.0034 (5)−0.0038 (5)
O320.0240 (7)0.0115 (6)0.0155 (6)−0.0061 (5)−0.0002 (5)−0.0009 (5)
C330.0129 (8)0.0136 (9)0.0125 (8)−0.0008 (7)−0.0043 (7)−0.0006 (7)
C340.0190 (9)0.0133 (9)0.0146 (9)−0.0026 (7)0.0022 (7)−0.0022 (7)
C350.0311 (11)0.0140 (9)0.0136 (9)−0.0027 (8)−0.0036 (8)−0.0015 (7)
C360.0150 (9)0.0144 (9)0.0137 (9)−0.0042 (7)0.0015 (7)−0.0004 (7)
O370.0251 (7)0.0123 (6)0.0161 (6)0.0000 (5)−0.0060 (5)−0.0037 (5)
O380.0294 (7)0.0124 (6)0.0169 (6)0.0024 (5)−0.0022 (5)−0.0007 (5)
O410.0213 (7)0.0137 (6)0.0158 (6)−0.0016 (5)−0.0057 (5)−0.0031 (5)
O420.0197 (7)0.0157 (6)0.0174 (6)0.0010 (5)−0.0019 (5)−0.0045 (5)
C430.0186 (9)0.0118 (8)0.0109 (8)−0.0061 (7)0.0017 (7)0.0009 (7)
C440.0215 (9)0.0108 (8)0.0136 (8)−0.0021 (7)−0.0013 (7)−0.0007 (7)
C450.0177 (9)0.0162 (9)0.0147 (9)−0.0053 (7)0.0015 (7)−0.0037 (7)
C460.0199 (9)0.0123 (9)0.0118 (8)−0.0041 (7)−0.0002 (7)0.0020 (7)
O470.0195 (7)0.0168 (7)0.0188 (6)−0.0047 (5)0.0026 (5)−0.0060 (5)
O480.0207 (7)0.0194 (7)0.0196 (6)−0.0087 (5)−0.0007 (5)−0.0051 (5)
N11—C121.487 (2)O32—C331.253 (2)
N11—H11A0.94 (2)C33—C341.516 (2)
N11—H11B0.95 (2)C34—C351.515 (2)
N11—H11C0.90 (2)C34—H34A0.9700
C12—C131.490 (2)C34—H34B0.9700
C12—H12A0.9700C35—C361.513 (2)
C12—H12B0.9700C35—H35A0.9700
C13—C141.314 (2)C35—H35B0.9700
C13—H130.9300C36—O381.239 (2)
C14—H14A0.9300C36—O371.288 (2)
C14—H14B0.9300O37—H371.18 (3)
N21—C221.484 (2)O41—C431.301 (2)
N21—H21A0.95 (3)O42—C431.235 (2)
N21—H21B0.93 (2)C43—C441.508 (2)
N21—H21C0.92 (2)C44—C451.518 (2)
C22—C231.494 (3)C44—H44A0.9700
C22—H22A0.9700C44—H44B0.9700
C22—H22B0.9700C45—C461.505 (2)
C23—C241.220 (4)C45—H45A0.9700
C23—H230.9300C45—H45B0.9700
C24—H24A0.9300C46—O481.230 (2)
C24—H24B0.9300C46—O471.308 (2)
O31—C331.273 (2)O47—H471.08 (3)
O31—H471.39 (3)
C12—N11—H11A113.9 (12)O32—C33—C34119.48 (14)
C12—N11—H11B107.5 (12)O31—C33—C34116.77 (14)
H11A—N11—H11B104.3 (16)C35—C34—C33114.54 (14)
C12—N11—H11C110.7 (14)C35—C34—H34A108.6
H11A—N11—H11C110.4 (17)C33—C34—H34A108.6
H11B—N11—H11C109.9 (18)C35—C34—H34B108.6
N11—C12—C13113.82 (14)C33—C34—H34B108.6
N11—C12—H12A108.8H34A—C34—H34B107.6
C13—C12—H12A108.8C36—C35—C34114.80 (14)
N11—C12—H12B108.8C36—C35—H35A108.6
C13—C12—H12B108.8C34—C35—H35A108.6
H12A—C12—H12B107.7C36—C35—H35B108.6
C14—C13—C12127.08 (17)C34—C35—H35B108.6
C14—C13—H13116.5H35A—C35—H35B107.5
C12—C13—H13116.5O38—C36—O37123.12 (15)
C13—C14—H14A120.0O38—C36—C35121.04 (15)
C13—C14—H14B120.0O37—C36—C35115.80 (15)
H14A—C14—H14B120.0C36—O37—H37110.1 (12)
C22—N21—H21A108.0 (14)O42—C43—O41123.53 (15)
C22—N21—H21B111.4 (12)O42—C43—C44121.67 (15)
H21A—N21—H21B111.1 (19)O41—C43—C44114.79 (14)
C22—N21—H21C108.6 (14)C43—C44—C45113.51 (14)
H21A—N21—H21C108 (2)C43—C44—H44A108.9
H21B—N21—H21C110.0 (18)C45—C44—H44A108.9
N21—C22—C23110.26 (17)C43—C44—H44B108.9
N21—C22—H22A109.6C45—C44—H44B108.9
C23—C22—H22A109.6H44A—C44—H44B107.7
N21—C22—H22B109.6C46—C45—C44114.39 (14)
C23—C22—H22B109.6C46—C45—H45A108.7
H22A—C22—H22B108.1C44—C45—H45A108.7
C24—C23—C22130.4 (3)C46—C45—H45B108.7
C24—C23—H23114.8C44—C45—H45B108.7
C22—C23—H23114.8H45A—C45—H45B107.6
C23—C24—H24A120.0O48—C46—O47123.71 (15)
C23—C24—H24B120.0O48—C46—C45121.43 (15)
H24A—C24—H24B120.0O47—C46—C45114.85 (15)
C33—O31—H47112.0 (12)C46—O47—H47115.2 (16)
O32—C33—O31123.73 (15)
D—H···AD—HH···AD···AD—H···A
N11—H11A···O480.94 (2)1.89 (2)2.8275 (19)174.4 (17)
N11—H11B···O32i0.95 (2)1.88 (2)2.8107 (19)166.9 (18)
N11—H11C···O41ii0.90 (2)1.95 (2)2.844 (2)172 (2)
N21—H21A···O320.95 (3)2.28 (3)2.972 (2)128.5 (19)
N21—H21A···O470.95 (3)2.21 (3)2.994 (2)138.7 (19)
N21—H21B···O42iii0.93 (2)1.86 (2)2.786 (2)169.2 (17)
N21—H21C···O38iv0.92 (2)1.86 (2)2.7809 (19)177 (2)
O37—H37···O41v1.18 (3)1.28 (3)2.4510 (15)180 (3)
O47—H47···O311.08 (3)1.39 (3)2.4707 (15)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N11—H11A⋯O480.94 (2)1.89 (2)2.8275 (19)174.4 (17)
N11—H11B⋯O32i 0.95 (2)1.88 (2)2.8107 (19)166.9 (18)
N11—H11C⋯O41ii 0.90 (2)1.95 (2)2.844 (2)172 (2)
N21—H21A⋯O320.95 (3)2.28 (3)2.972 (2)128.5 (19)
N21—H21A⋯O470.95 (3)2.21 (3)2.994 (2)138.7 (19)
N21—H21B⋯O42iii 0.93 (2)1.86 (2)2.786 (2)169.2 (17)
N21—H21C⋯O38iv 0.92 (2)1.86 (2)2.7809 (19)177 (2)
O37—H37⋯O41v 1.18 (3)1.28 (3)2.4510 (15)180 (3)
O47—H47⋯O311.08 (3)1.39 (3)2.4707 (15)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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