Literature DB >> 25458836

Synchronous opening and closing motions are essential for cAMP-dependent protein kinase A signaling.

Atul K Srivastava1, Leanna R McDonald1, Alessandro Cembran2, Jonggul Kim2, Larry R Masterson2, Christopher L McClendon3, Susan S Taylor3, Gianluigi Veglia4.   

Abstract

Conformational fluctuations play a central role in enzymatic catalysis. However, it is not clear how the rates and the coordination of the motions affect the different catalytic steps. Here, we used NMR spectroscopy to analyze the conformational fluctuations of the catalytic subunit of the cAMP-dependent protein kinase (PKA-C), a ubiquitous enzyme involved in a myriad of cell signaling events. We found that the wild-type enzyme undergoes synchronous motions involving several structural elements located in the small lobe of the kinase, which is responsible for nucleotide binding and release. In contrast, a mutation (Y204A) located far from the active site desynchronizes the opening and closing of the active cleft without changing the enzyme's structure, rendering it catalytically inefficient. Since the opening and closing motions govern the rate-determining product release, we conclude that optimal and coherent conformational fluctuations are necessary for efficient turnover of protein kinases.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25458836      PMCID: PMC4255147          DOI: 10.1016/j.str.2014.09.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  63 in total

1.  Evidence for an internal entropy contribution to phosphoryl transfer: a study of domain closure, backbone flexibility, and the catalytic cycle of cAMP-dependent protein kinase.

Authors:  Fei Li; Milind Gangal; Celina Juliano; Elliot Gorfain; Susan S Taylor; David A Johnson
Journal:  J Mol Biol       Date:  2002-01-18       Impact factor: 5.469

Review 2.  Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules.

Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 3.  Dynamics of cAMP-dependent protein kinase.

Authors:  D A Johnson; P Akamine; E Radzio-Andzelm; M Madhusudan; S S Taylor
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

Review 4.  Kinetic and catalytic mechanisms of protein kinases.

Authors:  J A Adams
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

Review 5.  The conformational plasticity of protein kinases.

Authors:  Morgan Huse; John Kuriyan
Journal:  Cell       Date:  2002-05-03       Impact factor: 41.582

Review 6.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 7.  Impact of enzyme motion on activity.

Authors:  Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2002-11-12       Impact factor: 3.162

8.  CPMG sequences with enhanced sensitivity to chemical exchange.

Authors:  C Wang; M J Grey; A G Palmer
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

9.  Serine-53 at the tip of the glycine-rich loop of cAMP-dependent protein kinase: role in catalysis, P-site specificity, and interaction with inhibitors.

Authors:  R T Aimes; W Hemmer; S S Taylor
Journal:  Biochemistry       Date:  2000-07-18       Impact factor: 3.162

10.  Dissection of the nucleotide and metal-phosphate binding sites in cAMP-dependent protein kinase.

Authors:  F W Herberg; M L Doyle; S Cox; S S Taylor
Journal:  Biochemistry       Date:  1999-05-11       Impact factor: 3.162

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  32 in total

Review 1.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

Review 2.  Protein Allostery and Conformational Dynamics.

Authors:  Jingjing Guo; Huan-Xiang Zhou
Journal:  Chem Rev       Date:  2016-02-15       Impact factor: 60.622

3.  Phosphoryl Transfer Reaction Snapshots in Crystals: INSIGHTS INTO THE MECHANISM OF PROTEIN KINASE A CATALYTIC SUBUNIT.

Authors:  Oksana Gerlits; Jianhui Tian; Amit Das; Paul Langan; William T Heller; Andrey Kovalevsky
Journal:  J Biol Chem       Date:  2015-04-28       Impact factor: 5.157

4.  Dynamically Driven Protein Allostery Exhibits Disparate Responses for Fast and Slow Motions.

Authors:  Jingjing Guo; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

5.  Dynamic allostery-based molecular workings of kinase:peptide complexes.

Authors:  Lalima G Ahuja; Phillip C Aoto; Alexandr P Kornev; Gianluigi Veglia; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-08       Impact factor: 11.205

6.  Mutation of a kinase allosteric node uncouples dynamics linked to phosphotransfer.

Authors:  Lalima G Ahuja; Alexandr P Kornev; Christopher L McClendon; Gianluigi Veglia; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

Review 7.  Dynamics-Driven Allostery in Protein Kinases.

Authors:  Alexandr P Kornev; Susan S Taylor
Journal:  Trends Biochem Sci       Date:  2015-10-21       Impact factor: 13.807

Review 8.  NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes.

Authors:  Kyle W East; Erin Skeens; Jennifer Y Cui; Helen B Belato; Brandon Mitchell; Rohaine Hsu; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  Biophys Rev       Date:  2019-12-14

9.  A Conserved Allosteric Pathway in Tyrosine Kinase Regulation.

Authors:  William M Marsiglia; Joseph Katigbak; Sijin Zheng; Moosa Mohammadi; Yingkai Zhang; Nathaniel J Traaseth
Journal:  Structure       Date:  2019-06-13       Impact factor: 5.006

10.  Protein kinase A in the neutron beam: Insights for catalysis from directly observing protons.

Authors:  Oksana Gerlits; Kevin L Weiss; Matthew P Blakeley; Gianluigi Veglia; Susan S Taylor; Andrey Kovalevsky
Journal:  Methods Enzymol       Date:  2020-01-17       Impact factor: 1.600

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