Literature DB >> 12416977

Impact of enzyme motion on activity.

Sharon Hammes-Schiffer1.   

Abstract

Experimental and theoretical data imply that enzyme motion plays an important role in enzymatic reactions. Enzyme motion can influence both the activation free energy barrier and the degree of barrier recrossing. A hybrid theoretical approach has been developed for the investigation of the relation between enzyme motion and activity. This approach includes both electronic and nuclear quantum effects. It distinguishes between thermally averaged promoting motions that influence the activation free energy barrier and dynamical motions that influence the barrier recrossings. Applications to hydride transfer in liver alcohol dehydrogenase and dihydrofolate reductase resulted in the identification and characterization of important enzyme motions. These applications have also led to the proposal of a network of coupled promoting motions in enzymatic reactions. These concepts have important implications for protein engineering and drug design.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12416977     DOI: 10.1021/bi0267137

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

1.  Contribution of active site residues to the activity and thermal stability of ribonuclease Sa.

Authors:  Gennady I Yakovlev; Vladimir A Mitkevich; Kevin L Shaw; Saul Trevino; Stephanie Newsom; C Nick Pace; Alexander A Makarov
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

2.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

3.  Atomic-resolution structures of horse liver alcohol dehydrogenase with NAD(+) and fluoroalcohols define strained Michaelis complexes.

Authors:  Bryce V Plapp; S Ramaswamy
Journal:  Biochemistry       Date:  2012-05-01       Impact factor: 3.162

4.  Protein dynamics control proton transfer from bulk solvent to protein interior: a case study with a green fluorescent protein.

Authors:  Anoop M Saxena; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

Review 5.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Toward theoretical analysis of long-range proton transfer kinetics in biomolecular pumps.

Authors:  P H König; N Ghosh; M Hoffmann; M Elstner; E Tajkhorshid; Th Frauenheim; Q Cui
Journal:  J Phys Chem A       Date:  2006-01-19       Impact factor: 2.781

Review 7.  Models for proton-coupled electron transfer in photosystem II.

Authors:  James M Mayer; Ian J Rhile; Frank B Larsen; Elizabeth A Mader; Todd F Markle; Antonio G DiPasquale
Journal:  Photosynth Res       Date:  2006-01-21       Impact factor: 3.573

8.  Reaction coordinate of an enzymatic reaction revealed by transition path sampling.

Authors:  Sara L Quaytman; Steven D Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

9.  A dynamic view of enzyme catalysis.

Authors:  Aurora Jiménez; Pere Clapés; Ramon Crehuet
Journal:  J Mol Model       Date:  2008-03-06       Impact factor: 1.810

10.  Computational identification of slow conformational fluctuations in proteins.

Authors:  Arvind Ramanathan; Pratul K Agarwal
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.