Literature DB >> 25426318

Quantitative evaluation of atlas-based high-density diffuse optical tomography for imaging of the human visual cortex.

Xue Wu1, Adam T Eggebrecht2, Silvina L Ferradal3, Joseph P Culver3, Hamid Dehghani1.   

Abstract

Image recovery in diffuse optical tomography (DOT) of the human brain often relies on accurate models of light propagation within the head. In the absence of subject specific models for image reconstruction, the use of atlas based models are showing strong promise. Although there exists some understanding in the use of some limited rigid model registrations in DOT, there has been a lack of a detailed analysis between errors in geometrical accuracy, light propagation in tissue and subsequent errors in dynamic imaging of recovered focal activations in the brain. In this work 11 different rigid registration algorithms, across 24 simulated subjects, are evaluated for DOT studies in the visual cortex. Although there exists a strong correlation (R(2) = 0.97) between geometrical surface error and internal light propagation errors, the overall variation is minimal when analysing recovered focal activations in the visual cortex. While a subject specific mesh gives the best results with a 1.2 mm average location error, no single algorithm provides errors greater than 4.5 mm. This work demonstrates that the use of rigid algorithms for atlas based imaging is a promising route when subject specific models are not available.

Entities:  

Keywords:  (110.6960) Tomography; (170.2655) Functional monitoring and imaging; (170.3010) Image reconstruction techniques; (170.3660) Light propagation in tissues

Year:  2014        PMID: 25426318      PMCID: PMC4242025          DOI: 10.1364/BOE.5.003882

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  45 in total

1.  The accuracy of near infrared spectroscopy and imaging during focal changes in cerebral hemodynamics.

Authors:  D A Boas; T Gaudette; G Strangman; X Cheng; J J Marota; J B Mandeville
Journal:  Neuroimage       Date:  2001-01       Impact factor: 6.556

2.  Factors affecting the accuracy of near-infrared spectroscopy concentration calculations for focal changes in oxygenation parameters.

Authors:  Gary Strangman; Maria Angela Franceschini; David A Boas
Journal:  Neuroimage       Date:  2003-04       Impact factor: 6.556

3.  Using the international 10-20 EEG system for positioning of transcranial magnetic stimulation.

Authors:  Uwe Herwig; Peyman Satrapi; Carlos Schönfeldt-Lecuona
Journal:  Brain Topogr       Date:  2003       Impact factor: 3.020

4.  Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI.

Authors:  Archana K Singh; Masako Okamoto; Haruka Dan; Valer Jurcak; Ippeita Dan
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

5.  10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems.

Authors:  Valer Jurcak; Daisuke Tsuzuki; Ippeita Dan
Journal:  Neuroimage       Date:  2007-01-04       Impact factor: 6.556

6.  Optical bedside monitoring of cerebral blood flow in acute ischemic stroke patients during head-of-bed manipulation.

Authors:  Christopher G Favilla; Rickson C Mesquita; Michael Mullen; Turgut Durduran; Xiangping Lu; Meeri N Kim; David L Minkoff; Scott E Kasner; Joel H Greenberg; Arjun G Yodh; John A Detre
Journal:  Stroke       Date:  2014-03-20       Impact factor: 7.914

7.  Enhanced functional brain imaging by using adaptive filtering and a depth compensation algorithm in diffuse optical tomography.

Authors:  Fenghua Tian; Haijing Niu; Bilal Khan; George Alexandrakis; Khosrow Behbehani; Hanli Liu
Journal:  IEEE Trans Med Imaging       Date:  2011-02-04       Impact factor: 10.048

Review 8.  Measurements of scattering and absorption changes in muscle and brain.

Authors:  E Gratton; S Fantini; M A Franceschini; G Gratton; M Fabiani
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1997-06-29       Impact factor: 6.237

9.  Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies.

Authors:  Robert J Cooper; Matteo Caffini; Jay Dubb; Qianqian Fang; Anna Custo; Daisuke Tsuzuki; Bruce Fischl; William Wells; Ippeita Dan; David A Boas
Journal:  Neuroimage       Date:  2012-05-23       Impact factor: 6.556

10.  Resting-state functional connectivity in the human brain revealed with diffuse optical tomography.

Authors:  Brian R White; Abraham Z Snyder; Alexander L Cohen; Steven E Petersen; Marcus E Raichle; Bradley L Schlaggar; Joseph P Culver
Journal:  Neuroimage       Date:  2009-04-01       Impact factor: 6.556

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  15 in total

1.  Fast and efficient image reconstruction for high density diffuse optical imaging of the human brain.

Authors:  Xue Wu; Adam T Eggebrecht; Silvina L Ferradal; Joseph P Culver; Hamid Dehghani
Journal:  Biomed Opt Express       Date:  2015-10-26       Impact factor: 3.732

2.  Experimental validation of a high-resolution diffuse optical imaging modality: photomagnetic imaging.

Authors:  Farouk Nouizi; Alex Luk; Dave Thayer; Yuting Lin; Seunghoon Ha; Gultekin Gulsen
Journal:  J Biomed Opt       Date:  2016-01       Impact factor: 3.170

3.  Probabilistic liver atlas construction.

Authors:  Esther Dura; Juan Domingo; Guillermo Ayala; Luis Marti-Bonmati; E Goceri
Journal:  Biomed Eng Online       Date:  2017-01-13       Impact factor: 2.819

4.  Automated voxel classification used with atlas-guided diffuse optical tomography for assessment of functional brain networks in young and older adults.

Authors:  Lin Li; Mary Cazzell; Olajide Babawale; Hanli Liu
Journal:  Neurophotonics       Date:  2016-10-06       Impact factor: 3.593

5.  Toward real-time diffuse optical tomography: accelerating light propagation modeling employing parallel computing on GPU and CPU.

Authors:  Matthaios Doulgerakis; Adam Eggebrecht; Stanislaw Wojtkiewicz; Joseph Culver; Hamid Dehghani
Journal:  J Biomed Opt       Date:  2017-12       Impact factor: 3.170

6.  Region-based diffuse optical tomography with registered atlas: in vivo acquisition of mouse optical properties.

Authors:  Wenbo Wan; Yihan Wang; Jin Qi; Lingling Liu; Wenjuan Ma; Jiao Li; Limin Zhang; Zhongxing Zhou; Huijuan Zhao; Feng Gao
Journal:  Biomed Opt Express       Date:  2016-11-14       Impact factor: 3.732

7.  Evaluation of rigid registration methods for whole head imaging in diffuse optical tomography.

Authors:  Xue Wu; Adam T Eggebrecht; Silvina L Ferradal; Joseph P Culver; Hamid Dehghani
Journal:  Neurophotonics       Date:  2015-07-21       Impact factor: 3.593

8.  Brain segmentation, spatial censoring, and averaging techniques for optical functional connectivity imaging in mice.

Authors:  Brian R White; Jonah A Padawer-Curry; Akiva S Cohen; Daniel J Licht; Arjun G Yodh
Journal:  Biomed Opt Express       Date:  2019-10-29       Impact factor: 3.732

9.  Fabrication and application of heterogeneous printed mouse phantoms for whole animal optical imaging.

Authors:  Brian Z Bentz; Anmol V Chavan; Dergan Lin; Esther H R Tsai; Kevin J Webb
Journal:  Appl Opt       Date:  2016-01-10       Impact factor: 1.980

10.  Variability in atlas registration of optical intrinsic signal imaging and its effect on functional connectivity analysis.

Authors:  Jonah A Padawer-Curry; Jharna Jahnavi; Jake S Breimann; Daniel J Licht; Arjun G Yodh; Akiva S Cohen; Brian R White
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2021-02-01       Impact factor: 2.129

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