Literature DB >> 29197176

Toward real-time diffuse optical tomography: accelerating light propagation modeling employing parallel computing on GPU and CPU.

Matthaios Doulgerakis1, Adam Eggebrecht2, Stanislaw Wojtkiewicz1, Joseph Culver2,3,4, Hamid Dehghani1.   

Abstract

Parameter recovery in diffuse optical tomography is a computationally expensive algorithm, especially when used for large and complex volumes, as in the case of human brain functional imaging. The modeling of light propagation, also known as the forward problem, is the computational bottleneck of the recovery algorithm, whereby the lack of a real-time solution is impeding practical and clinical applications. The objective of this work is the acceleration of the forward model, within a diffusion approximation-based finite-element modeling framework, employing parallelization to expedite the calculation of light propagation in realistic adult head models. The proposed methodology is applicable for modeling both continuous wave and frequency-domain systems with the results demonstrating a 10-fold speed increase when GPU architectures are available, while maintaining high accuracy. It is shown that, for a very high-resolution finite-element model of the adult human head with ∼600,000 nodes, consisting of heterogeneous layers, light propagation can be calculated at ∼0.25  s/excitation source. (2017) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

Entities:  

Keywords:  GPU; NIRFAST; diffuse optical tomography; finite-element method; parallel computing

Mesh:

Year:  2017        PMID: 29197176      PMCID: PMC5709934          DOI: 10.1117/1.JBO.22.12.125001

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  29 in total

1.  GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues.

Authors:  Nunu Ren; Jimin Liang; Xiaochao Qu; Jianfeng Li; Bingjia Lu; Jie Tian
Journal:  Opt Express       Date:  2010-03-29       Impact factor: 3.894

2.  Measurement of the absolute optical properties and cerebral blood volume of the adult human head with hybrid differential and spatially resolved spectroscopy.

Authors:  Terence S Leung; Ilias Tachtsidis; Martin Smith; David T Delpy; Clare E Elwell
Journal:  Phys Med Biol       Date:  2006-01-19       Impact factor: 3.609

3.  Parallel computing with graphics processing units for high-speed Monte Carlo simulation of photon migration.

Authors:  Erik Alerstam; Tomas Svensson; Stefan Andersson-Engels
Journal:  J Biomed Opt       Date:  2008 Nov-Dec       Impact factor: 3.170

4.  Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography.

Authors:  Michael Jermyn; Hamid Ghadyani; Michael A Mastanduno; Wes Turner; Scott C Davis; Hamid Dehghani; Brian W Pogue
Journal:  J Biomed Opt       Date:  2013-08       Impact factor: 3.170

5.  Full domain-decomposition scheme for diffuse optical tomography of large-sized tissues with a combined CPU and GPU parallelization.

Authors:  Xi Yi; Xin Wang; Weiting Chen; Wenbo Wan; Huijuan Zhao; Feng Gao
Journal:  Appl Opt       Date:  2014-05-01       Impact factor: 1.980

6.  Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain.

Authors:  T Austin; A P Gibson; G Branco; R Md Yusof; S R Arridge; J H Meek; J S Wyatt; D T Delpy; J C Hebden
Journal:  Neuroimage       Date:  2006-04-27       Impact factor: 6.556

7.  A finite element approach for modeling photon transport in tissue.

Authors:  S R Arridge; M Schweiger; M Hiraoka; D T Delpy
Journal:  Med Phys       Date:  1993 Mar-Apr       Impact factor: 4.071

8.  Acquired control of ventral premotor cortex activity by feedback training: an exploratory real-time FMRI and TMS study.

Authors:  Ranganatha Sitaram; Ralf Veit; Birte Stevens; Andrea Caria; Christian Gerloff; Niels Birbaumer; Friedhelm Hummel
Journal:  Neurorehabil Neural Repair       Date:  2011-09-08       Impact factor: 3.919

9.  Acquired self-control of insula cortex modulates emotion recognition and brain network connectivity in schizophrenia.

Authors:  Sergio Ruiz; Sangkyun Lee; Surjo R Soekadar; Andrea Caria; Ralf Veit; Tilo Kircher; Niels Birbaumer; Ranganatha Sitaram
Journal:  Hum Brain Mapp       Date:  2011-10-22       Impact factor: 5.038

10.  GPU-Accelerated Finite Element Method for Modelling Light Transport in Diffuse Optical Tomography.

Authors:  Martin Schweiger
Journal:  Int J Biomed Imaging       Date:  2011-10-16
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  5 in total

1.  The LUCA device: a multi-modal platform combining diffuse optics and ultrasound imaging for thyroid cancer screening.

Authors:  Lorenzo Cortese; Giuseppe Lo Presti; Marta Zanoletti; Gloria Aranda; Mauro Buttafava; Davide Contini; Alberto Dalla Mora; Hamid Dehghani; Laura Di Sieno; Sixte de Fraguier; Felicia A Hanzu; Mireia Mora Porta; An Nguyen-Dinh; Marco Renna; Bogdan Rosinski; Mattia Squarcia; Alberto Tosi; Udo M Weigel; Stanislaw Wojtkiewicz; Turgut Durduran
Journal:  Biomed Opt Express       Date:  2021-05-14       Impact factor: 3.732

2.  High-density functional diffuse optical tomography based on frequency-domain measurements improves image quality and spatial resolution.

Authors:  Matthaios Doulgerakis; Adam T Eggebrecht; Hamid Dehghani
Journal:  Neurophotonics       Date:  2019-08-21       Impact factor: 3.593

3.  Intraoperative Optical and Fluorescence Imaging of Blood Flow Distributions in Mastectomy Skin Flaps for Identifying Ischemic Tissues.

Authors:  Siavash Mazdeyasna; Chong Huang; Alisha B Paranzino; Mehrana Mohtasebi; Qiang Cheng; Lesley Wong; Guoqiang Yu
Journal:  Plast Reconstr Surg       Date:  2022-06-03       Impact factor: 5.169

4.  Multispectral, non-contact diffuse optical tomography of healthy human finger joints.

Authors:  Daniel Lighter; James Hughes; Iain Styles; Andrew Filer; Hamid Dehghani
Journal:  Biomed Opt Express       Date:  2018-03-02       Impact factor: 3.732

5.  Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy.

Authors:  Samuel H Forbes; Sobanawartiny Wijeakumar; Adam T Eggebrecht; Vincent A Magnotta; John P Spencer
Journal:  Neurophotonics       Date:  2021-06-12       Impact factor: 3.593

  5 in total

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