Literature DB >> 22634215

Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies.

Robert J Cooper1, Matteo Caffini, Jay Dubb, Qianqian Fang, Anna Custo, Daisuke Tsuzuki, Bruce Fischl, William Wells, Ippeita Dan, David A Boas.   

Abstract

We describe the validation of an anatomical brain atlas approach to the analysis of diffuse optical tomography (DOT). Using MRI data from 32 subjects, we compare the diffuse optical images of simulated cortical activation reconstructed using a registered atlas with those obtained using a subject's true anatomy. The error in localization of the simulated cortical activations when using a registered atlas is due to a combination of imperfect registration, anatomical differences between atlas and subject anatomies and the localization error associated with diffuse optical image reconstruction. When using a subject-specific MRI, any localization error is due to diffuse optical image reconstruction only. In this study we determine that using a registered anatomical brain atlas results in an average localization error of approximately 18 mm in Euclidean space. The corresponding error when the subject's own MRI is employed is 9.1 mm. In general, the cost of using atlas-guided DOT in place of subject-specific MRI-guided DOT is a doubling of the localization error. Our results show that despite this increase in error, reasonable anatomical localization is achievable even in cases where the subject-specific anatomy is unavailable.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22634215      PMCID: PMC3408558          DOI: 10.1016/j.neuroimage.2012.05.031

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  27 in total

1.  Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI.

Authors:  Archana K Singh; Masako Okamoto; Haruka Dan; Valer Jurcak; Ippeita Dan
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

2.  10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems.

Authors:  Valer Jurcak; Daisuke Tsuzuki; Ippeita Dan
Journal:  Neuroimage       Date:  2007-01-04       Impact factor: 6.556

3.  Sequence-independent segmentation of magnetic resonance images.

Authors:  Bruce Fischl; David H Salat; André J W van der Kouwe; Nikos Makris; Florent Ségonne; Brian T Quinn; Anders M Dale
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

5.  Diffuse Optics for Tissue Monitoring and Tomography.

Authors:  T Durduran; R Choe; W B Baker; A G Yodh
Journal:  Rep Prog Phys       Date:  2010-07

Review 6.  Illuminating the developing brain: the past, present and future of functional near infrared spectroscopy.

Authors:  S Lloyd-Fox; A Blasi; C E Elwell
Journal:  Neurosci Biobehav Rev       Date:  2009-07-24       Impact factor: 8.989

7.  Anatomical atlas-guided diffuse optical tomography of brain activation.

Authors:  Anna Custo; David A Boas; Daisuke Tsuzuki; Ippeita Dan; Rickson Mesquita; Bruce Fischl; W Eric L Grimson; Williams Wells
Journal:  Neuroimage       Date:  2009-07-28       Impact factor: 6.556

8.  Resting-state functional connectivity in the human brain revealed with diffuse optical tomography.

Authors:  Brian R White; Abraham Z Snyder; Alexander L Cohen; Steven E Petersen; Marcus E Raichle; Bradley L Schlaggar; Joseph P Culver
Journal:  Neuroimage       Date:  2009-04-01       Impact factor: 6.556

9.  MRI-guided diffuse optical spectroscopy of malignant and benign breast lesions.

Authors:  Vasilis Ntziachristos; A G Yodh; Mitchell D Schnall; Britton Chance
Journal:  Neoplasia       Date:  2002 Jul-Aug       Impact factor: 5.715

10.  Mesh-based Monte Carlo method using fast ray-tracing in Plücker coordinates.

Authors:  Qianqian Fang
Journal:  Biomed Opt Express       Date:  2010-07-15       Impact factor: 3.732

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  38 in total

1.  Evaluating real-time image reconstruction in diffuse optical tomography using physiologically realistic test data.

Authors:  Sabrina Brigadoi; Samuel Powell; Robert J Cooper; Laura A Dempsey; Simon Arridge; Nick Everdell; Jeremy Hebden; Adam P Gibson
Journal:  Biomed Opt Express       Date:  2015-11-09       Impact factor: 3.732

2.  Anatomical guidance for functional near-infrared spectroscopy: AtlasViewer tutorial.

Authors:  Christopher M Aasted; Meryem A Yücel; Robert J Cooper; Jay Dubb; Daisuke Tsuzuki; Lino Becerra; Mike P Petkov; David Borsook; Ippeita Dan; David A Boas
Journal:  Neurophotonics       Date:  2015-05-05       Impact factor: 3.593

3.  Quantitative evaluation of atlas-based high-density diffuse optical tomography for imaging of the human visual cortex.

Authors:  Xue Wu; Adam T Eggebrecht; Silvina L Ferradal; Joseph P Culver; Hamid Dehghani
Journal:  Biomed Opt Express       Date:  2014-10-13       Impact factor: 3.732

4.  Dynamic interpersonal neural synchronization underlying pain-induced cooperation in females.

Authors:  Chenbo Wang; Tingyu Zhang; Zhoukuidong Shan; Jieqiong Liu; Di Yuan; Xianchun Li
Journal:  Hum Brain Mapp       Date:  2019-04-04       Impact factor: 5.038

5.  Comparing diffuse optical tomography and functional magnetic resonance imaging signals during a cognitive task: pilot study.

Authors:  Estefania Hernández-Martin; Francisco Marcano; Oscar Casanova; Cristian Modroño; Julio Plata-Bello; Jose Luis González-Mora
Journal:  Neurophotonics       Date:  2017-03-15       Impact factor: 3.593

6.  Automated voxel classification used with atlas-guided diffuse optical tomography for assessment of functional brain networks in young and older adults.

Authors:  Lin Li; Mary Cazzell; Olajide Babawale; Hanli Liu
Journal:  Neurophotonics       Date:  2016-10-06       Impact factor: 3.593

7.  Comparison of a layered slab and an atlas head model for Monte Carlo fitting of time-domain near-infrared spectroscopy data of the adult head.

Authors:  Juliette Selb; Tyler M Ogden; Jay Dubb; Qianqian Fang; David A Boas
Journal:  J Biomed Opt       Date:  2014-01       Impact factor: 3.170

8.  Sensitivity of near-infrared spectroscopy and diffuse correlation spectroscopy to brain hemodynamics: simulations and experimental findings during hypercapnia.

Authors:  Juliette Selb; David A Boas; Suk-Tak Chan; Karleyton C Evans; Erin M Buckley; Stefan A Carp
Journal:  Neurophotonics       Date:  2014-07       Impact factor: 3.593

9.  Probing the early development of visual working memory capacity with functional near-infrared spectroscopy.

Authors:  Aaron T Buss; Nicholas Fox; David A Boas; John P Spencer
Journal:  Neuroimage       Date:  2013-05-23       Impact factor: 6.556

10.  Evaluation of rigid registration methods for whole head imaging in diffuse optical tomography.

Authors:  Xue Wu; Adam T Eggebrecht; Silvina L Ferradal; Joseph P Culver; Hamid Dehghani
Journal:  Neurophotonics       Date:  2015-07-21       Impact factor: 3.593

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