Literature DB >> 25370629

Interactive prostate segmentation using atlas-guided semi-supervised learning and adaptive feature selection.

Sang Hyun Park1, Yaozong Gao2, Yinghuan Shi3, Dinggang Shen4.   

Abstract

PURPOSE: Accurate prostate segmentation is necessary for maximizing the effectiveness of radiation therapy of prostate cancer. However, manual segmentation from 3D CT images is very time-consuming and often causes large intra- and interobserver variations across clinicians. Many segmentation methods have been proposed to automate this labor-intensive process, but tedious manual editing is still required due to the limited performance. In this paper, the authors propose a new interactive segmentation method that can (1) flexibly generate the editing result with a few scribbles or dots provided by a clinician, (2) fast deliver intermediate results to the clinician, and (3) sequentially correct the segmentations from any type of automatic or interactive segmentation methods.
METHODS: The authors formulate the editing problem as a semisupervised learning problem which can utilize a priori knowledge of training data and also the valuable information from user interactions. Specifically, from a region of interest near the given user interactions, the appropriate training labels, which are well matched with the user interactions, can be locally searched from a training set. With voting from the selected training labels, both confident prostate and background voxels, as well as unconfident voxels can be estimated. To reflect informative relationship between voxels, location-adaptive features are selected from the confident voxels by using regression forest and Fisher separation criterion. Then, the manifold configuration computed in the derived feature space is enforced into the semisupervised learning algorithm. The labels of unconfident voxels are then predicted by regularizing semisupervised learning algorithm.
RESULTS: The proposed interactive segmentation method was applied to correct automatic segmentation results of 30 challenging CT images. The correction was conducted three times with different user interactions performed at different time periods, in order to evaluate both the efficiency and the robustness. The automatic segmentation results with the original average Dice similarity coefficient of 0.78 were improved to 0.865-0.872 after conducting 55-59 interactions by using the proposed method, where each editing procedure took less than 3 s. In addition, the proposed method obtained the most consistent editing results with respect to different user interactions, compared to other methods.
CONCLUSIONS: The proposed method obtains robust editing results with few interactions for various wrong segmentation cases, by selecting the location-adaptive features and further imposing the manifold regularization. The authors expect the proposed method to largely reduce the laborious burdens of manual editing, as well as both the intra- and interobserver variability across clinicians.

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Mesh:

Year:  2014        PMID: 25370629      PMCID: PMC4224685          DOI: 10.1118/1.4898200

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  22 in total

1.  Concurrent segmentation of the prostate on MRI and CT via linked statistical shape models for radiotherapy planning.

Authors:  Najeeb Chowdhury; Robert Toth; Jonathan Chappelow; Sung Kim; Sabin Motwani; Salman Punekar; Haibo Lin; Stefan Both; Neha Vapiwala; Stephen Hahn; Anant Madabhushi
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Journal:  Med Image Comput Comput Assist Interv       Date:  2011

3.  Learning image context for segmentation of prostate in CT-guided radiotherapy.

Authors:  Wei Li; Shu Liao; Qianjin Feng; Wufan Chen; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

4.  Automatic segmentation of intra-treatment CT images for adaptive radiation therapy of the prostate.

Authors:  B C Davis; M Foskey; J Rosenman; L Goyal; S Chang; S Joshi
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5.  Random walks for image segmentation.

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Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-11       Impact factor: 6.226

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7.  Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information.

Authors:  Stefan Klein; Uulke A van der Heide; Irene M Lips; Marco van Vulpen; Marius Staring; Josien P W Pluim
Journal:  Med Phys       Date:  2008-04       Impact factor: 4.071

8.  Regression forests for efficient anatomy detection and localization in computed tomography scans.

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9.  Cardiac image super-resolution with global correspondence using multi-atlas patchmatch.

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Journal:  Med Image Comput Comput Assist Interv       Date:  2013

10.  Prostate Segmentation in CT Images via Spatial-Constrained Transductive Lasso.

Authors:  Yinghuan Shi; Shu Liao; Yaozong Gao; Daoqiang Zhang; Yang Gao; Dinggang Shen
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2013
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  8 in total

1.  Multiatlas-Based Segmentation Editing With Interaction-Guided Patch Selection and Label Fusion.

Authors:  Sang Hyun Park; Yaozong Gao; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2015-10-15       Impact factor: 4.538

2.  A combined learning algorithm for prostate segmentation on 3D CT images.

Authors:  Ling Ma; Rongrong Guo; Guoyi Zhang; David M Schuster; Baowei Fei
Journal:  Med Phys       Date:  2017-09-22       Impact factor: 4.071

3.  Combining Population and Patient-Specific Characteristics for Prostate Segmentation on 3D CT Images.

Authors:  Ling Ma; Rongrong Guo; Zhiqiang Tian; Rajesh Venkataraman; Saradwata Sarkar; Xiabi Liu; Funmilayo Tade; David M Schuster; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

4.  Deep learning enables automatic detection and segmentation of brain metastases on multisequence MRI.

Authors:  Endre Grøvik; Darvin Yi; Michael Iv; Elizabeth Tong; Daniel Rubin; Greg Zaharchuk
Journal:  J Magn Reson Imaging       Date:  2019-05-02       Impact factor: 4.813

5.  Machine learning and modeling: Data, validation, communication challenges.

Authors:  Issam El Naqa; Dan Ruan; Gilmer Valdes; Andre Dekker; Todd McNutt; Yaorong Ge; Q Jackie Wu; Jung Hun Oh; Maria Thor; Wade Smith; Arvind Rao; Clifton Fuller; Ying Xiao; Frank Manion; Matthew Schipper; Charles Mayo; Jean M Moran; Randall Ten Haken
Journal:  Med Phys       Date:  2018-08-24       Impact factor: 4.071

6.  Automatic segmentation of the prostate on CT images using deep learning and multi-atlas fusion.

Authors:  Ling Ma; Rongrong Guo; Guoyi Zhang; Funmilayo Tade; David M Schuster; Peter Nieh; Viraj Master; Baowei Fei
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

7.  Graph-convolutional-network-based interactive prostate segmentation in MR images.

Authors:  Zhiqiang Tian; Xiaojian Li; Yaoyue Zheng; Zhang Chen; Zhong Shi; Lizhi Liu; Baowei Fei
Journal:  Med Phys       Date:  2020-07-13       Impact factor: 4.071

8.  Automatic Intracranial Segmentation: Is the Clinician Still Needed?

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Journal:  Technol Cancer Res Treat       Date:  2018-01-01
  8 in total

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