Literature DB >> 22003749

Active learning for interactive 3D image segmentation.

Andrew Top1, Ghassan Hamarneh, Rafeef Abugharbieh.   

Abstract

We propose a novel method for applying active learning strategies to interactive 3D image segmentation. Active learning has been recently introduced to the field of image segmentation. However, so far discussions have focused on 2D images only. Here, we frame interactive 3D image segmentation as a classification problem and incorporate active learning in order to alleviate the user from choosing where to provide interactive input. Specifically, we evaluate a given segmentation by constructing an "uncertainty field" over the image domain based on boundary, regional, smoothness and entropy terms. We then calculate and highlight the plane of maximal uncertainty in a batch query step. The user can proceed to guide the labeling of the data on the query plane, hence actively providing additional training data where the classifier has the least confidence. We validate our method against random plane selection showing an average DSC improvement of 10% in the first five plane suggestions (batch queries). Furthermore, our user study shows that our method saves the user 64% of their time, on average.

Mesh:

Year:  2011        PMID: 22003749     DOI: 10.1007/978-3-642-23626-6_74

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  21 in total

1.  Interactive prostate segmentation using atlas-guided semi-supervised learning and adaptive feature selection.

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Journal:  Med Phys       Date:  2014-11       Impact factor: 4.071

2.  Automated deep-phenotyping of the vertebrate brain.

Authors:  Amin Allalou; Yuelong Wu; Mostafa Ghannad-Rezaie; Peter M Eimon; Mehmet Fatih Yanik
Journal:  Elife       Date:  2017-04-13       Impact factor: 8.140

3.  A survey of GPU-based medical image computing techniques.

Authors:  Lin Shi; Wen Liu; Heye Zhang; Yongming Xie; Defeng Wang
Journal:  Quant Imaging Med Surg       Date:  2012-09

4.  Multiatlas-Based Segmentation Editing With Interaction-Guided Patch Selection and Label Fusion.

Authors:  Sang Hyun Park; Yaozong Gao; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2015-10-15       Impact factor: 4.538

5.  Optimization-based interactive segmentation interface for multiregion problems.

Authors:  John S H Baxter; Martin Rajchl; Terry M Peters; Elvis C S Chen
Journal:  J Med Imaging (Bellingham)       Date:  2016-06-14

6.  Effective user interaction in online interactive semantic segmentation of glioblastoma magnetic resonance imaging.

Authors:  Jens Petersen; Martin Bendszus; Jürgen Debus; Sabine Heiland; Klaus H Maier-Hein
Journal:  J Med Imaging (Bellingham)       Date:  2017-08-22

7.  Accelerated learning-based interactive image segmentation using pairwise constraints.

Authors:  Jamshid Sourati; Deniz Erdogmus; Jennifer G Dy; Dana H Brooks
Journal:  IEEE Trans Image Process       Date:  2014-07       Impact factor: 10.856

8.  4D ACTIVE CUT: AN INTERACTIVE TOOL FOR PATHOLOGICAL ANATOMY MODELING.

Authors:  Bo Wang; Wei Liu; Marcel Prastawa; Andrei Irimia; Paul M Vespa; John D van Horn; P Thomas Fletcher; Guido Gerig
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014-04

9.  Active Deep Learning with Fisher Information for Patch-wise Semantic Segmentation.

Authors:  Jamshid Sourati; Ali Gholipour; Jennifer G Dy; Sila Kurugol; Simon K Warfield
Journal:  Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018)       Date:  2018-09-20

10.  A geometric method for the detection and correction of segmentation leaks of anatomical structures in volumetric medical images.

Authors:  Achia Kronman; Leo Joskowicz
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-09-04       Impact factor: 2.924

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