Literature DB >> 25326388

The intrinsically disordered domain of the antitoxin Phd chaperones the toxin Doc against irreversible inactivation and misfolding.

Steven De Gieter1, Albert Konijnenberg2, Ariel Talavera1, Annika Butterer2, Sarah Haesaerts1, Henri De Greve3, Frank Sobott4, Remy Loris1, Abel Garcia-Pino5.   

Abstract

The toxin Doc from the phd/doc toxin-antitoxin module targets the cellular translation machinery and is inhibited by its antitoxin partner Phd. Here we show that Phd also functions as a chaperone, keeping Doc in an active, correctly folded conformation. In the absence of Phd, Doc exists in a relatively expanded state that is prone to dimerization through domain swapping with its active site loop acting as hinge region. The domain-swapped dimer is not capable of arresting protein synthesis in vitro, whereas the Doc monomer is. Upon binding to Phd, Doc becomes more compact and is secured in its monomeric state with a neutralized active site.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Chaperone; Chemical Biology; Crystal Structure; Doc; Fic; Phd; Phosphorylation Enzyme; Small Angle X-ray Scattering; Toxin-Antitoxin; Translation Control

Mesh:

Substances:

Year:  2014        PMID: 25326388      PMCID: PMC4256337          DOI: 10.1074/jbc.M114.572396

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

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Authors:  Katsuhiko Kamada; Fumio Hanaoka
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Authors:  Finbarr Hayes
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

3.  Corepression of the P1 addiction operon by Phd and Doc.

Authors:  R Magnuson; M B Yarmolinsky
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

4.  A graphical interface for the FoldX forcefield.

Authors:  Joost Van Durme; Javier Delgado; Francois Stricher; Luis Serrano; Joost Schymkowitz; Frederic Rousseau
Journal:  Bioinformatics       Date:  2011-04-19       Impact factor: 6.937

Review 5.  Disorder- and dynamics-based regulatory mechanisms in toxin-antitoxin modules.

Authors:  Remy Loris; Abel Garcia-Pino
Journal:  Chem Rev       Date:  2014-05-07       Impact factor: 60.622

Review 6.  Bacterial persistence and toxin-antitoxin loci.

Authors:  Kenn Gerdes; Etienne Maisonneuve
Journal:  Annu Rev Microbiol       Date:  2012       Impact factor: 15.500

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Persister cells and tolerance to antimicrobials.

Authors:  Iris Keren; Niilo Kaldalu; Amy Spoering; Yipeng Wang; Kim Lewis
Journal:  FEMS Microbiol Lett       Date:  2004-01-15       Impact factor: 2.742

9.  Rejuvenation of CcdB-poisoned gyrase by an intrinsically disordered protein domain.

Authors:  Natalie De Jonge; Abel Garcia-Pino; Lieven Buts; Sarah Haesaerts; Daniel Charlier; Klaus Zangger; Lode Wyns; Henri De Greve; Remy Loris
Journal:  Mol Cell       Date:  2009-07-31       Impact factor: 17.970

Review 10.  Protein acrobatics in pairs--dimerization via domain swapping.

Authors:  Angela M Gronenborn
Journal:  Curr Opin Struct Biol       Date:  2009-01-21       Impact factor: 6.809

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  5 in total

1.  Crystallization and X-ray analysis of all of the players in the autoregulation of the ataRT toxin-antitoxin system.

Authors:  Dukas Jurėnas; Laurence Van Melderen; Abel Garcia-Pino
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-06-26       Impact factor: 1.056

2.  Structural Determinants for Antitoxin Identity and Insulation of Cross Talk between Homologous Toxin-Antitoxin Systems.

Authors:  Lauren R Walling; J Scott Butler
Journal:  J Bacteriol       Date:  2016-11-18       Impact factor: 3.490

3.  An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.

Authors:  Abel Garcia-Pino; Steven De Gieter; Ariel Talavera; Henri De Greve; Rouslan G Efremov; Remy Loris
Journal:  Nat Chem Biol       Date:  2016-05-02       Impact factor: 15.040

4.  Challenges in describing the conformation and dynamics of proteins with ambiguous behavior.

Authors:  Joel Roca-Martinez; Tamas Lazar; Jose Gavalda-Garcia; David Bickel; Rita Pancsa; Bhawna Dixit; Konstantina Tzavella; Pathmanaban Ramasamy; Maite Sanchez-Fornaris; Isel Grau; Wim F Vranken
Journal:  Front Mol Biosci       Date:  2022-08-03

5.  Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin.

Authors:  Frédéric V Stanger; Alexander Harms; Christoph Dehio; Tilman Schirmer
Journal:  PLoS One       Date:  2016-09-22       Impact factor: 3.240

  5 in total

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