SUMMARY: A graphical user interface for the FoldX protein design program has been developed as a plugin for the YASARA molecular graphics suite. The most prominent FoldX commands such as free energy difference upon mutagenesis and interaction energy calculations can now be run entirely via a windowed menu system and the results are immediately shown on screen. AVAILABILITY AND IMPLEMENTATION: The plugin is written in Python and is freely available for download at http://foldxyasara.switchlab.org/ and supported on Linux, MacOSX and MS Windows.
SUMMARY: A graphical user interface for the FoldX protein design program has been developed as a plugin for the YASARA molecular graphics suite. The most prominent FoldX commands such as free energy difference upon mutagenesis and interaction energy calculations can now be run entirely via a windowed menu system and the results are immediately shown on screen. AVAILABILITY AND IMPLEMENTATION: The plugin is written in Python and is freely available for download at http://foldxyasara.switchlab.org/ and supported on Linux, MacOSX and MS Windows.
Authors: Rocio Acuna-Hidalgo; Denny Schanze; Ariana Kariminejad; Ann Nordgren; Mohamad Hasan Kariminejad; Peter Conner; Giedre Grigelioniene; Daniel Nilsson; Magnus Nordenskjöld; Anna Wedell; Christoph Freyer; Anna Wredenberg; Dagmar Wieczorek; Gabriele Gillessen-Kaesbach; Hülya Kayserili; Nursel Elcioglu; Siavash Ghaderi-Sohi; Payman Goodarzi; Hamidreza Setayesh; Maartje van de Vorst; Marloes Steehouwer; Rolph Pfundt; Birgit Krabichler; Cynthia Curry; Malcolm G MacKenzie; Kym M Boycott; Christian Gilissen; Andreas R Janecke; Alexander Hoischen; Martin Zenker Journal: Am J Hum Genet Date: 2014-08-21 Impact factor: 11.025
Authors: Hamideh Yadegari; Julia Driesen; Anna Pavlova; Arijit Biswas; Vytautas Ivaskevicius; Robert Klamroth; Johannes Oldenburg Journal: Haematologica Date: 2013-03-28 Impact factor: 9.941