Literature DB >> 26598662

Synthetic biology devices for in vitro and in vivo diagnostics.

Shimyn Slomovic1, Keith Pardee2, James J Collins3.   

Abstract

There is a growing need to enhance our capabilities in medical and environmental diagnostics. Synthetic biologists have begun to focus their biomolecular engineering approaches toward this goal, offering promising results that could lead to the development of new classes of inexpensive, rapidly deployable diagnostics. Many conventional diagnostics rely on antibody-based platforms that, although exquisitely sensitive, are slow and costly to generate and cannot readily confront rapidly emerging pathogens or be applied to orphan diseases. Synthetic biology, with its rational and short design-to-production cycles, has the potential to overcome many of these limitations. Synthetic biology devices, such as engineered gene circuits, bring new capabilities to molecular diagnostics, expanding the molecular detection palette, creating dynamic sensors, and untethering reactions from laboratory equipment. The field is also beginning to move toward in vivo diagnostics, which could provide near real-time surveillance of multiple pathological conditions. Here, we describe current efforts in synthetic biology, focusing on the translation of promising technologies into pragmatic diagnostic tools and platforms.

Entities:  

Keywords:  biosensing; diagnostics; nanobiotechnology; synthetic biology; synthetic gene networks

Mesh:

Year:  2015        PMID: 26598662      PMCID: PMC4664311          DOI: 10.1073/pnas.1508521112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  90 in total

1.  Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria.

Authors:  Alexander S Mironov; Ivan Gusarov; Ruslan Rafikov; Lubov Errais Lopez; Konstantin Shatalin; Rimma A Kreneva; Daniel A Perumov; Evgeny Nudler
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

Review 2.  Synthetic biology projects in vitro.

Authors:  Anthony C Forster; George M Church
Journal:  Genome Res       Date:  2006-12-06       Impact factor: 9.043

3.  Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system.

Authors:  Zachary Z Sun; Enoch Yeung; Clarmyra A Hayes; Vincent Noireaux; Richard M Murray
Journal:  ACS Synth Biol       Date:  2013-12-04       Impact factor: 5.110

4.  Programmable bacteria detect and record an environmental signal in the mammalian gut.

Authors:  Jonathan W Kotula; S Jordan Kerns; Lev A Shaket; Layla Siraj; James J Collins; Jeffrey C Way; Pamela A Silver
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

5.  HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans.

Authors:  Steven P Wilkinson; Anne Grove
Journal:  J Biol Chem       Date:  2004-09-24       Impact factor: 5.157

6.  A doxorubicin delivery platform using engineered natural membrane vesicle exosomes for targeted tumor therapy.

Authors:  Yanhua Tian; Suping Li; Jian Song; Tianjiao Ji; Motao Zhu; Gregory J Anderson; Jingyan Wei; Guangjun Nie
Journal:  Biomaterials       Date:  2013-12-15       Impact factor: 12.479

7.  Gene editing of CCR5 in autologous CD4 T cells of persons infected with HIV.

Authors:  Pablo Tebas; David Stein; Winson W Tang; Ian Frank; Shelley Q Wang; Gary Lee; S Kaye Spratt; Richard T Surosky; Martin A Giedlin; Geoff Nichol; Michael C Holmes; Philip D Gregory; Dale G Ando; Michael Kalos; Ronald G Collman; Gwendolyn Binder-Scholl; Gabriela Plesa; Wei-Ting Hwang; Bruce L Levine; Carl H June
Journal:  N Engl J Med       Date:  2014-03-06       Impact factor: 91.245

8.  High-throughput preparation methods of crude extract for robust cell-free protein synthesis.

Authors:  Yong-Chan Kwon; Michael C Jewett
Journal:  Sci Rep       Date:  2015-03-02       Impact factor: 4.379

9.  Tunable protein degradation in bacteria.

Authors:  D Ewen Cameron; James J Collins
Journal:  Nat Biotechnol       Date:  2014-11-17       Impact factor: 54.908

10.  Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology.

Authors:  James Chappell; Kirsten Jensen; Paul S Freemont
Journal:  Nucleic Acids Res       Date:  2013-01-31       Impact factor: 16.971

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  76 in total

1.  Modulating and evaluating receptor promiscuity through directed evolution and modeling.

Authors:  Sarah C Stainbrook; Jessica S Yu; Michael P Reddick; Neda Bagheri; Keith E J Tyo
Journal:  Protein Eng Des Sel       Date:  2017-06-01       Impact factor: 1.650

2.  A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.

Authors:  Benjamin J Des Soye; Vincent R Gerbasi; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Cell Chem Biol       Date:  2019-11-06       Impact factor: 8.116

3.  Engineered immune cells as highly sensitive cancer diagnostics.

Authors:  Amin Aalipour; Hui-Yen Chuang; Surya Murty; Aloma L D'Souza; Seung-Min Park; Gunsagar S Gulati; Chirag B Patel; Corinne Beinat; Federico Simonetta; Ivana Martinić; Gayatri Gowrishankar; Elise R Robinson; Eamon Aalipour; Zahra Zhian; Sanjiv S Gambhir
Journal:  Nat Biotechnol       Date:  2019-03-18       Impact factor: 54.908

Review 4.  Molecular Imaging in Synthetic Biology, and Synthetic Biology in Molecular Imaging.

Authors:  Assaf A Gilad; Mikhail G Shapiro
Journal:  Mol Imaging Biol       Date:  2017-06       Impact factor: 3.488

Review 5.  Engineered Niches to Analyze Mechanisms of Metastasis and Guide Precision Medicine.

Authors:  Aaron H Morris; Sophia M Orbach; Grace G Bushnell; Robert S Oakes; Jacqueline S Jeruss; Lonnie D Shea
Journal:  Cancer Res       Date:  2020-05-14       Impact factor: 12.701

Review 6.  Plant protein-based hydrophobic fine and ultrafine carrier particles in drug delivery systems.

Authors:  Hedieh Malekzad; Hamed Mirshekari; Parham Sahandi Zangabad; S M Moosavi Basri; Fazel Baniasadi; Maryam Sharifi Aghdam; Mahdi Karimi; Michael R Hamblin
Journal:  Crit Rev Biotechnol       Date:  2017-04-24       Impact factor: 8.429

7.  Emerging Microtechnologies and Automated Systems for Rapid Bacterial Identification and Antibiotic Susceptibility Testing.

Authors:  Yiyan Li; Xing Yang; Weian Zhao
Journal:  SLAS Technol       Date:  2017-08-29       Impact factor: 3.047

Review 8.  Point-of-Care Diagnostics: Recent Developments in a Connected Age.

Authors:  Samiksha Nayak; Nicole R Blumenfeld; Tassaneewan Laksanasopin; Samuel K Sia
Journal:  Anal Chem       Date:  2016-12-13       Impact factor: 6.986

9.  A Primer on Emerging Field-Deployable Synthetic Biology Tools for Global Water Quality Monitoring.

Authors:  Walter Thavarajah; Matthew S Verosloff; Jaeyoung K Jung; Khalid K Alam; Joshua D Miller; Michael C Jewett; Sera L Young; Julius B Lucks
Journal:  NPJ Clean Water       Date:  2020-04-03

10.  Design of a Transcriptional Biosensor for the Portable, On-Demand Detection of Cyanuric Acid.

Authors:  Xiangyang Liu; Adam D Silverman; Khalid K Alam; Erik Iverson; Julius B Lucks; Michael C Jewett; Srivatsan Raman
Journal:  ACS Synth Biol       Date:  2019-12-26       Impact factor: 5.110

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