Literature DB >> 25313388

Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.

G A Christensen1, G M Zane1, A E Kazakov2, X Li3, D A Rodionov4, P S Novichkov2, I Dubchak2, A P Arkin2, J D Wall5.   

Abstract

Although the enzymes for dissimilatory sulfate reduction by microbes have been studied, the mechanisms for transcriptional regulation of the encoding genes remain unknown. In a number of bacteria the transcriptional regulator Rex has been shown to play a key role as a repressor of genes producing proteins involved in energy conversion. In the model sulfate-reducing microbe Desulfovibrio vulgaris Hildenborough, the gene DVU_0916 was observed to resemble other known Rex proteins. Therefore, the DVU_0916 protein has been predicted to be a transcriptional repressor of genes encoding proteins that function in the process of sulfate reduction in D. vulgaris Hildenborough. Examination of the deduced DVU_0916 protein identified two domains, one a winged helix DNA-binding domain common for transcription factors, and the other a Rossman fold that could potentially interact with pyridine nucleotides. A deletion of the putative rex gene was made in D. vulgaris Hildenborough, and transcript expression studies of sat, encoding sulfate adenylyl transferase, showed increased levels in the D. vulgaris Hildenborough Rex (RexDvH) mutant relative to the parental strain. The RexDvH-binding site upstream of sat was identified, confirming RexDvH to be a repressor of sat. We established in vitro that the presence of elevated NADH disrupted the interaction between RexDvH and DNA. Examination of the 5' transcriptional start site for the sat mRNA revealed two unique start sites, one for respiring cells that correlated with the RexDvH-binding site and a second for fermenting cells. Collectively, these data support the role of RexDvH as a transcription repressor for sat that senses the redox status of the cell.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 25313388      PMCID: PMC4288696          DOI: 10.1128/JB.02083-14

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  43 in total

1.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Authors:  John F Heidelberg; Rekha Seshadri; Shelley A Haveman; Christopher L Hemme; Ian T Paulsen; James F Kolonay; Jonathan A Eisen; Naomi Ward; Barbara Methe; Lauren M Brinkac; Sean C Daugherty; Robert T Deboy; Robert J Dodson; A Scott Durkin; Ramana Madupu; William C Nelson; Steven A Sullivan; Derrick Fouts; Daniel H Haft; Jeremy Selengut; Jeremy D Peterson; Tanja M Davidsen; Nikhat Zafar; Liwei Zhou; Diana Radune; George Dimitrov; Mark Hance; Kevin Tran; Hoda Khouri; John Gill; Terry R Utterback; Tamara V Feldblyum; Judy D Wall; Gerrit Voordouw; Claire M Fraser
Journal:  Nat Biotechnol       Date:  2004-04-11       Impact factor: 54.908

2.  Effect of the deletion of qmoABC and the promoter-distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough.

Authors:  Grant M Zane; Huei-che Bill Yen; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2010-06-25       Impact factor: 4.792

3.  Identification, cloning and expression of p25, an AT-rich DNA-binding protein from the extreme thermophile, Thermus aquaticus YT-1.

Authors:  X Du; J J Pène
Journal:  Nucleic Acids Res       Date:  1999-04-01       Impact factor: 16.971

4.  A novel sensor of NADH/NAD+ redox poise in Streptomyces coelicolor A3(2).

Authors:  Dimitris Brekasis; Mark S B Paget
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

5.  Development of a markerless genetic exchange system for Desulfovibrio vulgaris Hildenborough and its use in generating a strain with increased transformation efficiency.

Authors:  Kimberly L Keller; Kelly S Bender; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2009-10-16       Impact factor: 4.792

6.  The crystal structure of Desulfovibrio vulgaris dissimilatory sulfite reductase bound to DsrC provides novel insights into the mechanism of sulfate respiration.

Authors:  Tânia F Oliveira; Clemens Vonrhein; Pedro M Matias; Sofia S Venceslau; Inês A C Pereira; Margarida Archer
Journal:  J Biol Chem       Date:  2008-09-30       Impact factor: 5.157

7.  Redox sensing by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus.

Authors:  Martin Pagels; Stephan Fuchs; Jan Pané-Farré; Christian Kohler; Leonhard Menschner; Michael Hecker; Peter J McNamarra; Mikael C Bauer; Claes von Wachenfeldt; Manuel Liebeke; Michael Lalk; Gunnar Sander; Christof von Eiff; Richard A Proctor; Susanne Engelmann
Journal:  Mol Microbiol       Date:  2010-03-30       Impact factor: 3.501

8.  New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20.

Authors:  Kimberly L Keller; Barbara J Rapp-Giles; Elizabeth S Semkiw; Iris Porat; Steven D Brown; Judy D Wall
Journal:  Appl Environ Microbiol       Date:  2013-11-15       Impact factor: 4.792

9.  qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data.

Authors:  Jan Hellemans; Geert Mortier; Anne De Paepe; Frank Speleman; Jo Vandesompele
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Genetic basis for nitrate resistance in Desulfovibrio strains.

Authors:  Hannah L Korte; Samuel R Fels; Geoff A Christensen; Morgan N Price; Jennifer V Kuehl; Grant M Zane; Adam M Deutschbauer; Adam P Arkin; Judy D Wall
Journal:  Front Microbiol       Date:  2014-04-21       Impact factor: 5.640

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  10 in total

1.  Role of the global regulator Rex in control of NAD+ -regeneration in Clostridioides (Clostridium) difficile.

Authors:  Laurent Bouillaut; Thomas Dubois; Michael B Francis; Nadine Daou; Marc Monot; Joseph A Sorg; Abraham L Sonenshein; Bruno Dupuy
Journal:  Mol Microbiol       Date:  2019-04-02       Impact factor: 3.501

2.  Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation.

Authors:  Kyle Sander; Charlotte M Wilson; Miguel Rodriguez; Dawn M Klingeman; Thomas Rydzak; Brian H Davison; Steven D Brown
Journal:  Biotechnol Biofuels       Date:  2015-12-12       Impact factor: 6.040

3.  Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide.

Authors:  Ian T Cadby; Matthew Faulkner; Jeanne Cheneby; Justine Long; Jacques van Helden; Alain Dolla; Jeffrey A Cole
Journal:  Sci Rep       Date:  2017-11-24       Impact factor: 4.379

4.  Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough.

Authors:  Kara B De León; Grant M Zane; Valentine V Trotter; Gregory P Krantz; Adam P Arkin; Gareth P Butland; Peter J Walian; Matthew W Fields; Judy D Wall
Journal:  MBio       Date:  2017-10-17       Impact factor: 7.867

5.  Genome of 'Ca. Desulfovibrio trichonymphae', an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut.

Authors:  Hirokazu Kuwahara; Masahiro Yuki; Kazuki Izawa; Moriya Ohkuma; Yuichi Hongoh
Journal:  ISME J       Date:  2016-11-01       Impact factor: 10.302

6.  The redox-sensing protein Rex modulates ethanol production in Thermoanaerobacterium saccharolyticum.

Authors:  Tianyong Zheng; Anthony A Lanahan; Lee R Lynd; Daniel G Olson
Journal:  PLoS One       Date:  2018-04-05       Impact factor: 3.240

7.  NADH-Mediated Gene Expression in Streptococcus pneumoniae and Role of Rex as a Transcriptional Repressor of the Rex-Regulon.

Authors:  Muhammad Afzal; Sulman Shafeeq; Oscar P Kuipers
Journal:  Front Microbiol       Date:  2018-06-19       Impact factor: 5.640

8.  Rex in Caldicellulosiruptor bescii: Novel regulon members and its effect on the production of ethanol and overflow metabolites.

Authors:  Kyle Sander; Daehwan Chung; Doug Hyatt; Janet Westpheling; Dawn M Klingeman; Miguel Rodriguez; Nancy L Engle; Timothy J Tschaplinski; Brian H Davison; Steven D Brown
Journal:  Microbiologyopen       Date:  2018-05-23       Impact factor: 3.139

9.  Anion transport as a target of adaption to perchlorate in sulfate-reducing communities.

Authors:  Magdalena K Stoeva; Jennifer Kuehl; Alexey E Kazakov; Ouwei Wang; Rowena Rushton-Green; John D Coates
Journal:  ISME J       Date:  2019-10-28       Impact factor: 10.302

10.  Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut.

Authors:  Mariko Takeuchi; Hirokazu Kuwahara; Takumi Murakami; Kazuki Takahashi; Rei Kajitani; Atsushi Toyoda; Takehiko Itoh; Moriya Ohkuma; Yuichi Hongoh
Journal:  ISME J       Date:  2020-06-01       Impact factor: 10.302

  10 in total

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