Literature DB >> 18829451

The crystal structure of Desulfovibrio vulgaris dissimilatory sulfite reductase bound to DsrC provides novel insights into the mechanism of sulfate respiration.

Tânia F Oliveira1, Clemens Vonrhein, Pedro M Matias, Sofia S Venceslau, Inês A C Pereira, Margarida Archer.   

Abstract

Sulfate reduction is one of the earliest types of energy metabolism used by ancestral organisms to sustain life. Despite extensive studies, many questions remain about the way respiratory sulfate reduction is associated with energy conservation. A crucial enzyme in this process is the dissimilatory sulfite reductase (dSiR), which contains a unique siroheme-[4Fe4S] coupled cofactor. Here, we report the structure of desulfoviridin from Desulfovibrio vulgaris, in which the dSiR DsrAB (sulfite reductase) subunits are bound to the DsrC protein. The alpha(2)beta(2)gamma(2) assembly contains two siroheme-[4Fe4S] cofactors bound by DsrB, two sirohydrochlorins and two [4Fe4S] centers bound by DsrA, and another four [4Fe4S] centers in the ferredoxin domains. A sulfite molecule, coordinating the siroheme, is found at the active site. The DsrC protein is bound in a cleft between DsrA and DsrB with its conserved C-terminal cysteine reaching the distal side of the siroheme. We propose a novel mechanism for the process of sulfite reduction involving DsrAB, DsrC, and the DsrMKJOP membrane complex (a membrane complex with putative disulfide/thiol reductase activity), in which two of the six electrons for reduction of sulfite derive from the membrane quinone pool. These results show that DsrC is involved in sulfite reduction, which changes the mechanism of sulfate respiration. This has important implications for models used to date ancient sulfur metabolism based on sulfur isotope fractionations.

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Year:  2008        PMID: 18829451      PMCID: PMC2662231          DOI: 10.1074/jbc.M805643200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  49 in total

1.  A diagnostic reaction of Desulphovibrio desulphuricans.

Authors:  J POSTGATE
Journal:  Nature       Date:  1959-02-14       Impact factor: 49.962

2.  Domain evolution and functional diversification of sulfite reductases.

Authors:  Ashita Dhillon; Sulip Goswami; Monica Riley; Andreas Teske; Mitchell Sogin
Journal:  Astrobiology       Date:  2005-02       Impact factor: 4.335

3.  Cu(I)-dependent biogenesis of the galactose oxidase redox cofactor.

Authors:  Mei M Whittaker; James W Whittaker
Journal:  J Biol Chem       Date:  2003-04-01       Impact factor: 5.157

4.  Characterization of the cysJIH regions of Salmonella typhimurium and Escherichia coli B. DNA sequences of cysI and cysH and a model for the siroheme-Fe4S4 active center of sulfite reductase hemoprotein based on amino acid homology with spinach nitrite reductase.

Authors:  J Ostrowski; J Y Wu; D C Rueger; B E Miller; L M Siegel; N M Kredich
Journal:  J Biol Chem       Date:  1989-09-15       Impact factor: 5.157

5.  X-ray structure of the gamma-subunit of a dissimilatory sulfite reductase: fixed and flexible C-terminal arms.

Authors:  Gerd J Mander; Manfred S Weiss; Reiner Hedderich; Jörg Kahnt; Ulrich Ermler; Eberhard Warkentin
Journal:  FEBS Lett       Date:  2005-08-29       Impact factor: 4.124

6.  The third subunit of desulfoviridin-type dissimilatory sulfite reductases.

Authors:  A J Pierik; M G Duyvis; J M van Helvoort; R B Wolbert; W R Hagen
Journal:  Eur J Biochem       Date:  1992-04-01

7.  Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum.

Authors:  Christiane Dahl; Sabine Engels; Andrea S Pott-Sperling; Andrea Schulte; Johannes Sander; Yvonne Lübbe; Oliver Deuster; Daniel C Brune
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

8.  Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis is a sulfite reductase with a covalent Cys-Tyr bond in the active site.

Authors:  Robert Schnell; Tatyana Sandalova; Ulf Hellman; Ylva Lindqvist; Gunter Schneider
Journal:  J Biol Chem       Date:  2005-05-24       Impact factor: 5.157

9.  The dissimilatory sulfite reductase from Desulfosarcina variabilis is a desulforubidin containing uncoupled metalated sirohemes and S = 9/2 iron-sulfur clusters.

Authors:  A F Arendsen; M F Verhagen; R B Wolbert; A J Pierik; A J Stams; M S Jetten; W R Hagen
Journal:  Biochemistry       Date:  1993-10-05       Impact factor: 3.162

10.  Sulfite reductase structure at 1.6 A: evolution and catalysis for reduction of inorganic anions.

Authors:  B R Crane; L M Siegel; E D Getzoff
Journal:  Science       Date:  1995-10-06       Impact factor: 47.728

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  42 in total

1.  The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration.

Authors:  Sofia S Venceslau; Rita R Lino; Ines A C Pereira
Journal:  J Biol Chem       Date:  2010-05-24       Impact factor: 5.157

2.  Purification, crystallization and preliminary X-ray analysis of the dissimilatory sulfite reductase from Desulfovibrio vulgaris Miyazaki F.

Authors:  Hideaki Ogata; Yasuhito Shomura; Aruna Goenka Agrawal; Amrit Pal Kaur; Wolfgang Gärtner; Yoshiki Higuchi; Wolfgang Lubitz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-28

3.  Insight into the molecular mechanism of the sulfur oxidation process by reverse sulfite reductase (rSiR) from sulfur oxidizer Allochromatium vinosum.

Authors:  Semanti Ghosh; Angshuman Bagchi
Journal:  J Mol Model       Date:  2018-04-26       Impact factor: 1.810

4.  Erosion of functional independence early in the evolution of a microbial mutualism.

Authors:  Kristina L Hillesland; Sujung Lim; Jason J Flowers; Serdar Turkarslan; Nicolas Pinel; Grant M Zane; Nicholas Elliott; Yujia Qin; Liyou Wu; Nitin S Baliga; Jizhong Zhou; Judy D Wall; David A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

5.  Intracellular metabolite levels shape sulfur isotope fractionation during microbial sulfate respiration.

Authors:  Boswell A Wing; Itay Halevy
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

6.  The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

Authors:  Pilar Junier; Thomas Junier; Sheila Podell; David R Sims; John C Detter; Athanasios Lykidis; Cliff S Han; Nicholas S Wigginton; Terry Gaasterland; Rizlan Bernier-Latmani
Journal:  Environ Microbiol       Date:  2010-10       Impact factor: 5.491

Review 7.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

8.  Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.

Authors:  G A Christensen; G M Zane; A E Kazakov; X Li; D A Rodionov; P S Novichkov; I Dubchak; A P Arkin; J D Wall
Journal:  J Bacteriol       Date:  2014-10-13       Impact factor: 3.490

9.  Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.

Authors:  Maxim Shatsky; Simon Allen; Barbara L Gold; Nancy L Liu; Thomas R Juba; Sonia A Reveco; Dwayne A Elias; Ramadevi Prathapam; Jennifer He; Wenhong Yang; Evelin D Szakal; Haichuan Liu; Mary E Singer; Jil T Geller; Bonita R Lam; Avneesh Saini; Valentine V Trotter; Steven C Hall; Susan J Fisher; Steven E Brenner; Swapnil R Chhabra; Terry C Hazen; Judy D Wall; H Ewa Witkowska; Mark D Biggin; John-Marc Chandonia; Gareth Butland
Journal:  Mol Cell Proteomics       Date:  2016-02-12       Impact factor: 5.911

10.  ATP-independent substrate reduction by nitrogenase P-cluster variant.

Authors:  Chi Chung Lee; Yilin Hu; Markus W Ribbe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

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