Literature DB >> 25309643

Analyzing complex functional brain networks: Fusing statistics and network science to understand the brain*†

Sean L Simpson1, F DuBois Bowman2, Paul J Laurienti3.   

Abstract

Complex functional brain network analyses have exploded over the last decade, gaining traction due to their profound clinical implications. The application of network science (an interdisciplinary offshoot of graph theory) has facilitated these analyses and enabled examining the brain as an integrated system that produces complex behaviors. While the field of statistics has been integral in advancing activation analyses and some connectivity analyses in functional neuroimaging research, it has yet to play a commensurate role in complex network analyses. Fusing novel statistical methods with network-based functional neuroimage analysis will engender powerful analytical tools that will aid in our understanding of normal brain function as well as alterations due to various brain disorders. Here we survey widely used statistical and network science tools for analyzing fMRI network data and discuss the challenges faced in filling some of the remaining methodological gaps. When applied and interpreted correctly, the fusion of network scientific and statistical methods has a chance to revolutionize the understanding of brain function.

Entities:  

Keywords:  Graph theory; connectivity; fMRI; network model; neuroimaging; small-world

Year:  2013        PMID: 25309643      PMCID: PMC4189131          DOI: 10.1214/13-SS103

Source DB:  PubMed          Journal:  Stat Surv


  109 in total

1.  Focal brain lesions to critical locations cause widespread disruption of the modular organization of the brain.

Authors:  Caterina Gratton; Emi M Nomura; Fernando Pérez; Mark D'Esposito
Journal:  J Cogn Neurosci       Date:  2012-03-08       Impact factor: 3.225

2.  Functional connectivity patterns of human magnetoencephalographic recordings: a 'small-world' network?

Authors:  C J Stam
Journal:  Neurosci Lett       Date:  2004-01-23       Impact factor: 3.046

3.  Community structure in time-dependent, multiscale, and multiplex networks.

Authors:  Peter J Mucha; Thomas Richardson; Kevin Macon; Mason A Porter; Jukka-Pekka Onnela
Journal:  Science       Date:  2010-05-14       Impact factor: 47.728

4.  An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks.

Authors:  Sean L Simpson; Malaak N Moussa; Paul J Laurienti
Journal:  Neuroimage       Date:  2012-01-17       Impact factor: 6.556

5.  Analysis of weighted networks.

Authors:  M E J Newman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-24

Review 6.  Nonlinear multivariate analysis of neurophysiological signals.

Authors:  Ernesto Pereda; Rodrigo Quian Quiroga; Joydeep Bhattacharya
Journal:  Prog Neurobiol       Date:  2005-11-14       Impact factor: 11.685

7.  Small worlds inside big brains.

Authors:  Olaf Sporns; Christopher J Honey
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

8.  Alzheimer disease: improved visual interpretation of PET images by using three-dimensional stereotaxic surface projections.

Authors:  J H Burdette; S Minoshima; T Vander Borght; D D Tran; D E Kuhl
Journal:  Radiology       Date:  1996-03       Impact factor: 11.105

9.  Neurobiologically realistic determinants of self-organized criticality in networks of spiking neurons.

Authors:  Mikail Rubinov; Olaf Sporns; Jean-Philippe Thivierge; Michael Breakspear
Journal:  PLoS Comput Biol       Date:  2011-06-02       Impact factor: 4.475

10.  Group analysis of self-organizing maps based on functional MRI using restricted Frechet means.

Authors:  Arnaud P Fournel; Emanuelle Reynaud; Michael J Brammer; Andrew Simmons; Cedric E Ginestet
Journal:  Neuroimage       Date:  2013-03-25       Impact factor: 6.556

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  40 in total

1.  Disentangling Brain Graphs: A Note on the Conflation of Network and Connectivity Analyses.

Authors:  Sean L Simpson; Paul J Laurienti
Journal:  Brain Connect       Date:  2015-10-15

2.  Predicting brain network changes in Alzheimer's disease with link prediction algorithms.

Authors:  Sadegh Sulaimany; Mohammad Khansari; Peyman Zarrineh; Madelaine Daianu; Neda Jahanshad; Paul M Thompson; Ali Masoudi-Nejad
Journal:  Mol Biosyst       Date:  2017-03-28

3.  Connectivity patterns during music listening: Evidence for action-based processing in musicians.

Authors:  Vinoo Alluri; Petri Toiviainen; Iballa Burunat; Marina Kliuchko; Peter Vuust; Elvira Brattico
Journal:  Hum Brain Mapp       Date:  2017-03-28       Impact factor: 5.038

4.  Identifying functional co-activation patterns in neuroimaging studies via poisson graphical models.

Authors:  Wenqiong Xue; Jian Kang; F DuBois Bowman; Tor D Wager; Jian Guo
Journal:  Biometrics       Date:  2014-08-21       Impact factor: 2.571

5.  Sparse graphs using exchangeable random measures.

Authors:  François Caron; Emily B Fox
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2017-09-23       Impact factor: 4.488

6.  Associations Between Daily Affective Instability and Connectomics in Functional Subnetworks in Remitted Patients with Recurrent Major Depressive Disorder.

Authors:  Michelle N Servaas; Harriëtte Riese; Remco J Renken; Marieke Wichers; Jojanneke A Bastiaansen; Caroline A Figueroa; Hanneke Geugies; Roel Jt Mocking; Linda Geerligs; Jan-Bernard C Marsman; André Aleman; Aart H Schene; Robert A Schoevers; Henricus G Ruhé
Journal:  Neuropsychopharmacology       Date:  2017-03-31       Impact factor: 7.853

7.  LCN: a random graph mixture model for community detection in functional brain networks.

Authors:  Christopher Bryant; Hongtu Zhu; Mihye Ahn; Joseph Ibrahim
Journal:  Stat Interface       Date:  2017       Impact factor: 0.582

8.  The (in)stability of functional brain network measures across thresholds.

Authors:  Kathleen A Garrison; Dustin Scheinost; Emily S Finn; Xilin Shen; R Todd Constable
Journal:  Neuroimage       Date:  2015-05-27       Impact factor: 6.556

9.  The brain science interface.

Authors:  Sean Simpson; Jonathan Burdette; Paul Laurienti
Journal:  Signif (Oxf)       Date:  2015-08-06

10.  A parsimonious statistical method to detect groupwise differentially expressed functional connectivity networks.

Authors:  Shuo Chen; Jian Kang; Yishi Xing; Guoqing Wang
Journal:  Hum Brain Mapp       Date:  2015-09-29       Impact factor: 5.038

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