Literature DB >> 22281670

An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks.

Sean L Simpson1, Malaak N Moussa, Paul J Laurienti.   

Abstract

Group-based brain connectivity networks have great appeal for researchers interested in gaining further insight into complex brain function and how it changes across different mental states and disease conditions. Accurately constructing these networks presents a daunting challenge given the difficulties associated with accounting for inter-subject topological variability. Viable approaches to this task must engender networks that capture the constitutive topological properties of the group of subjects' networks that it is aiming to represent. The conventional approach has been to use a mean or median correlation network (Achard et al., 2006; Song et al., 2009; Zuo et al., 2011) to embody a group of networks. However, the degree to which their topological properties conform with those of the groups that they are purported to represent has yet to be explored. Here we investigate the performance of these mean and median correlation networks. We also propose an alternative approach based on an exponential random graph modeling framework and compare its performance to that of the aforementioned conventional approach. Simpson et al. (2011) illustrated the utility of exponential random graph models (ERGMs) for creating brain networks that capture the topological characteristics of a single subject's brain network. However, their advantageousness in the context of producing a brain network that "represents" a group of brain networks has yet to be examined. Here we show that our proposed ERGM approach outperforms the conventional mean and median correlation based approaches and provides an accurate and flexible method for constructing group-based representative brain networks. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22281670      PMCID: PMC3303958          DOI: 10.1016/j.neuroimage.2012.01.071

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  29 in total

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2.  Assortative mixing in networks.

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Journal:  Phys Rev Lett       Date:  2002-10-28       Impact factor: 9.161

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4.  Towards the virtual brain: network modeling of the intact and the damaged brain.

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Authors:  Ann M Peiffer; Christina E Hugenschmidt; Joseph A Maldjian; Ramon Casanova; Ryali Srikanth; Satoru Hayasaka; Jonathan H Burdette; Robert A Kraft; Paul J Laurienti
Journal:  Hum Brain Mapp       Date:  2009-01       Impact factor: 5.038

6.  Specification of Exponential-Family Random Graph Models: Terms and Computational Aspects.

Authors:  Martina Morris; Mark S Handcock; David R Hunter
Journal:  J Stat Softw       Date:  2008       Impact factor: 6.440

7.  Small-world and scale-free organization of voxel-based resting-state functional connectivity in the human brain.

Authors:  M P van den Heuvel; C J Stam; M Boersma; H E Hulshoff Pol
Journal:  Neuroimage       Date:  2008-08-22       Impact factor: 6.556

Review 8.  Complex brain networks: graph theoretical analysis of structural and functional systems.

Authors:  Ed Bullmore; Olaf Sporns
Journal:  Nat Rev Neurosci       Date:  2009-02-04       Impact factor: 34.870

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Authors:  David Meunier; Renaud Lambiotte; Alex Fornito; Karen D Ersche; Edward T Bullmore
Journal:  Front Neuroinform       Date:  2009-10-30       Impact factor: 4.081

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Authors:  Sophie Achard; Raymond Salvador; Brandon Whitcher; John Suckling; Ed Bullmore
Journal:  J Neurosci       Date:  2006-01-04       Impact factor: 6.167

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  45 in total

Review 1.  The brain as a complex system: using network science as a tool for understanding the brain.

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2.  Disentangling Brain Graphs: A Note on the Conflation of Network and Connectivity Analyses.

Authors:  Sean L Simpson; Paul J Laurienti
Journal:  Brain Connect       Date:  2015-10-15

3.  The modular and integrative functional architecture of the human brain.

Authors:  Maxwell A Bertolero; B T Thomas Yeo; Mark D'Esposito
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4.  A novel joint sparse partial correlation method for estimating group functional networks.

Authors:  Xiaoyun Liang; Alan Connelly; Fernando Calamante
Journal:  Hum Brain Mapp       Date:  2015-12-21       Impact factor: 5.038

5.  Stochastic geometric network models for groups of functional and structural connectomes.

Authors:  Eric J Friedman; Adam S Landsberg; Julia P Owen; Yi-Ou Li; Pratik Mukherjee
Journal:  Neuroimage       Date:  2014-07-25       Impact factor: 6.556

6.  Analysis of brain subnetworks within the context of their whole-brain networks.

Authors:  Mohsen Bahrami; Paul J Laurienti; Sean L Simpson
Journal:  Hum Brain Mapp       Date:  2019-08-22       Impact factor: 5.038

7.  The Rhesus Monkey Connectome Predicts Disrupted Functional Networks Resulting from Pharmacogenetic Inactivation of the Amygdala.

Authors:  David S Grayson; Eliza Bliss-Moreau; Christopher J Machado; Jeffrey Bennett; Kelly Shen; Kathleen A Grant; Damien A Fair; David G Amaral
Journal:  Neuron       Date:  2016-07-20       Impact factor: 17.173

8.  Space-independent community and hub structure of functional brain networks.

Authors:  Farnaz Zamani Esfahlani; Maxwell A Bertolero; Danielle S Bassett; Richard F Betzel
Journal:  Neuroimage       Date:  2020-02-17       Impact factor: 6.556

9.  Detecting and Testing Altered Brain Connectivity Networks with K-partite Network Topology.

Authors:  Shuo Chen; F DuBois Bowman; Yishi Xing
Journal:  Comput Stat Data Anal       Date:  2019-07-09       Impact factor: 1.681

10.  The brain science interface.

Authors:  Sean Simpson; Jonathan Burdette; Paul Laurienti
Journal:  Signif (Oxf)       Date:  2015-08-06
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