Literature DB >> 25306923

Mechanism of polyubiquitination by human anaphase-promoting complex: RING repurposing for ubiquitin chain assembly.

Nicholas G Brown1, Edmond R Watson2, Florian Weissmann3, Marc A Jarvis3, Ryan VanderLinden4, Christy R R Grace1, Jeremiah J Frye1, Renping Qiao3, Prakash Dube5, Georg Petzold3, Shein Ei Cho1, Omar Alsharif1, Ju Bao1, Iain F Davidson3, Jie J Zheng1, Amanda Nourse1, Igor Kurinov6, Jan-Michael Peters7, Holger Stark8, Brenda A Schulman9.   

Abstract

Polyubiquitination by E2 and E3 enzymes is a predominant mechanism regulating protein function. Some RING E3s, including anaphase-promoting complex/cyclosome (APC), catalyze polyubiquitination by sequential reactions with two different E2s. An initiating E2 ligates ubiquitin to an E3-bound substrate. Another E2 grows a polyubiquitin chain on the ubiquitin-primed substrate through poorly defined mechanisms. Here we show that human APC's RING domain is repurposed for dual functions in polyubiquitination. The canonical RING surface activates an initiating E2-ubiquitin intermediate for substrate modification. However, APC engages and activates its specialized ubiquitin chain-elongating E2 UBE2S in ways that differ from current paradigms. During chain assembly, a distinct APC11 RING surface helps deliver a substrate-linked ubiquitin to accept another ubiquitin from UBE2S. Our data define mechanisms of APC/UBE2S-mediated polyubiquitination, reveal diverse functions of RING E3s and E2s, and provide a framework for understanding distinctive RING E3 features specifying ubiquitin chain elongation.

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Year:  2014        PMID: 25306923      PMCID: PMC4272865          DOI: 10.1016/j.molcel.2014.09.009

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  49 in total

1.  Priming and extending: a UbcH5/Cdc34 E2 handoff mechanism for polyubiquitination on a SCF substrate.

Authors:  Kenneth Wu; Jordan Kovacev; Zhen-Qiang Pan
Journal:  Mol Cell       Date:  2010-03-26       Impact factor: 17.970

2.  Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation.

Authors:  Michael J Eddins; Candice M Carlile; Kamila M Gomez; Cecile M Pickart; Cynthia Wolberger
Journal:  Nat Struct Mol Biol       Date:  2006-09-17       Impact factor: 15.369

Review 3.  RING-type E3 ligases: master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination.

Authors:  Meredith B Metzger; Jonathan N Pruneda; Rachel E Klevit; Allan M Weissman
Journal:  Biochim Biophys Acta       Date:  2013-06-06

4.  A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.

Authors:  Yi Sheng; Jenny H Hong; Ryan Doherty; Tharan Srikumar; Jonathan Shloush; George V Avvakumov; John R Walker; Sheng Xue; Dante Neculai; Janet W Wan; Sung K Kim; Cheryl H Arrowsmith; Brian Raught; Sirano Dhe-Paganon
Journal:  Mol Cell Proteomics       Date:  2012-04-10       Impact factor: 5.911

5.  Identification of a physiological E2 module for the human anaphase-promoting complex.

Authors:  Adam Williamson; Katherine E Wickliffe; Barbara G Mellone; Ling Song; Gary H Karpen; Michael Rape
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

6.  Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation.

Authors:  David M Duda; Laura A Borg; Daniel C Scott; Harold W Hunt; Michal Hammel; Brenda A Schulman
Journal:  Cell       Date:  2008-09-19       Impact factor: 41.582

7.  A conserved asparagine has a structural role in ubiquitin-conjugating enzymes.

Authors:  Christopher E Berndsen; Reuven Wiener; Ian W Yu; Alison E Ringel; Cynthia Wolberger
Journal:  Nat Chem Biol       Date:  2013-01-06       Impact factor: 15.040

8.  Structures of APC/C(Cdh1) with substrates identify Cdh1 and Apc10 as the D-box co-receptor.

Authors:  Paula C A da Fonseca; Eric H Kong; Ziguo Zhang; Anne Schreiber; Mark A Williams; Edward P Morris; David Barford
Journal:  Nature       Date:  2010-11-24       Impact factor: 49.962

9.  Substrate binding on the APC/C occurs between the coactivator Cdh1 and the processivity factor Doc1.

Authors:  Bettina A Buschhorn; Georg Petzold; Marta Galova; Prakash Dube; Claudine Kraft; Franz Herzog; Holger Stark; Jan-Michael Peters
Journal:  Nat Struct Mol Biol       Date:  2010-12-26       Impact factor: 15.369

10.  Electron microscopy structure of human APC/C(CDH1)-EMI1 reveals multimodal mechanism of E3 ligase shutdown.

Authors:  Jeremiah J Frye; Nicholas G Brown; Georg Petzold; Edmond R Watson; Christy R R Grace; Amanda Nourse; Marc A Jarvis; Richard W Kriwacki; Jan-Michael Peters; Holger Stark; Brenda A Schulman
Journal:  Nat Struct Mol Biol       Date:  2013-05-26       Impact factor: 15.369

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  62 in total

1.  An E2 accessory domain increases affinity for the anaphase-promoting complex and ensures E2 competition.

Authors:  Juliet R Girard; Jeanette L Tenthorey; David O Morgan
Journal:  J Biol Chem       Date:  2015-08-25       Impact factor: 5.157

2.  Control of APC/C-dependent ubiquitin chain elongation by reversible phosphorylation.

Authors:  Allison Craney; Aileen Kelly; Luying Jia; Indro Fedrigo; Hongtao Yu; Michael Rape
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-25       Impact factor: 11.205

3.  Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.

Authors:  Joshua D Wright; Peter D Mace; Catherine L Day
Journal:  Nat Struct Mol Biol       Date:  2015-12-14       Impact factor: 15.369

Review 4.  The COP9 signalosome and cullin-RING ligases in the heart.

Authors:  Xuejun Wang; Douglas S Martin
Journal:  Am J Cardiovasc Dis       Date:  2015-03-20

Review 5.  Structural basis of generic versus specific E2-RING E3 interactions in protein ubiquitination.

Authors:  Mehmet Gundogdu; Helen Walden
Journal:  Protein Sci       Date:  2019-08-23       Impact factor: 6.725

6.  Th1/Th17 polarization persists following whole-cell pertussis vaccination despite repeated acellular boosters.

Authors:  Ricardo da Silva Antunes; Mariana Babor; Chelsea Carpenter; Natalie Khalil; Mario Cortese; Alexander J Mentzer; Grégory Seumois; Christopher D Petro; Lisa A Purcell; Pandurangan Vijayanand; Shane Crotty; Bali Pulendran; Bjoern Peters; Alessandro Sette
Journal:  J Clin Invest       Date:  2018-08-06       Impact factor: 14.808

7.  Unique auto-ubiquitination activities of artificial RING fingers in cancer cells.

Authors:  Kazuhide Miyamoto; Arisa Nakatani; Mayumi Sunagawa; Kazuki Saito
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

8.  Multiple Weak Linear Motifs Enhance Recruitment and Processivity in SPOP-Mediated Substrate Ubiquitination.

Authors:  Wendy K Pierce; Christy R Grace; Jihun Lee; Amanda Nourse; Melissa R Marzahn; Edmond R Watson; Anthony A High; Junmin Peng; Brenda A Schulman; Tanja Mittag
Journal:  J Mol Biol       Date:  2015-10-22       Impact factor: 5.469

9.  Ube2s regulates Sox2 stability and mouse ES cell maintenance.

Authors:  J Wang; Y Zhang; J Hou; X Qian; H Zhang; Z Zhang; M Li; R Wang; K Liao; Y Wang; Z Li; D Zhong; P Wan; L Dong; F Liu; X Wang; Y Wan; W Xiao; W W Zhang
Journal:  Cell Death Differ       Date:  2015-08-21       Impact factor: 15.828

Review 10.  Posing the APC/C E3 Ubiquitin Ligase to Orchestrate Cell Division.

Authors:  Edmond R Watson; Nicholas G Brown; Jan-Michael Peters; Holger Stark; Brenda A Schulman
Journal:  Trends Cell Biol       Date:  2018-10-25       Impact factor: 20.808

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