| Literature DB >> 25295591 |
Yu Lu1, Zhitong Wu2, Qiliu Peng1, Liping Ma1, Xiaolian Zhang1, Jiangyang Zhao1, Xue Qin1, Shan Li1.
Abstract
BACKGROUND: Interleukin-4 (IL-4) is best known as an important mediator and modulator of immune and inflammatory responses. Hepatocellular carcinoma (HCC) is a typical inflammation-related cancer, and genetic variations in the IL-4 gene may be associated with the risk of hepatitis B virus (HBV)-related HCC. However, few studies have been conducted on their association.Entities:
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Year: 2014 PMID: 25295591 PMCID: PMC4190355 DOI: 10.1371/journal.pone.0110061
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1PCR-RFLP assay for analyzing the IL-4−589C/T and −33C/T polymorphisms of the IL-4 gene.
PCR product was digested by restriction enzyme and visualized on a 2.5% agarose gel. a −589C/T polymorphism. Lanes 1 and 2 show CC genotype; lanes 3, 4 and 5 show TT genotype; lanes 6 and 7 show CT genotype. b −33C/T polymorphism. Lanes 1, 2 and 3 show TT genotype; lanes 4 and 5 show CC genotype; lanes 6 and 7 show CT genotype. M, marker.
Figure 2Sequencing map of the genotype for the IL-4−589C/T polymorphism.
Arrow in parts a−c indicates CC, TT and C/T genotypes, respectively.
Figure 3Sequencing map of the genotype for the IL-4−33C/T polymorphisms.
Arrow in parts a−c indicates CC, TT and C/T genotypes, respectively.
Basic characteristic of the study population.
| Variable | HealthyControls(n = 170) | CHB patients(n = 129) |
| LC patients(n = 62) |
| HCC patients(n = 154) |
|
| Age(year, mean±SD) | 37.68±11.76 | 37.67±7.78 | 0.994 | 47.38±9.64 | <0.001 | 49.19±11.33 | <0.001 |
| Gender, N(%) | |||||||
| Male | 147(86.5) | 115(89.1) | 0.488 | 52(83.9) | 0.618 | 135(87.7) | 0.751 |
| Female | 23(13.5) | 14(10.2) | 10(16.1) | 19(12.3) |
Genotype and allele frequencies of −589C/T and −33C/T polymorphisms between HBV-related patients and healthy controls.
| Polymorphisms | Healthycontrols,N = 170(%) | CHBpatientsN = 129(%) | LCpatients,N = 62(%) | HCCpatients,N = 154(%) | CHB patientsvs. Healthycontrols | LC patients vs.Healthy controls | HCC patientsvs. Healthycontrols |
| OR (95%CI) | |||||||
| −589C/T | |||||||
| TT | 115(67.6) | 77(59.7) | 37(59.7) | 111(72.1) | 1.00 | 1.00 | 1.00 |
| CT | 51(30.0) | 43(33.3) | 22(35.5) | 39(25.3) | 1.28(0.78–2.12) | 1.58(0.80–3.10) | 0.90(0.52–1.56) |
| CC | 4(2.4) | 9(7.0) | 3(4.8) | 4(2.6) | 3.35(0.99–11.28) | 2.10(0.39–11.34) | 1.13(0.26–5.06) |
| Dominant model | 55(32.4) | 52(40.3) | 25(40.3) | 43(27.9) | 1.44(0.89–2.33) | 1.56(0.81–2.99) | 0.921(0.54–1.56) |
| Recessive model | 166(97.6) | 120(93.0) | 59(95.2) | 150(97.4) | 3.08(0.93–10.25) | 1.92(0.87–7.36) | 1.17(0.27–5.13) |
| T allele | 281(82.6) | 197(76.4) | 96(77.4) | 261(84.7) | 1.00 | 1.00 | 1.00 |
| C allele | 59(17.4) | 61(23.6) | 28(22.6) | 47(15.3) | 1.49(0.99–2.23) | 1.51(0.87–2.61) | 0.95(0.60–1.51) |
| P-HWE | 0.550 | 0.383 | 0.907 | 0.796 | |||
| −33C/T | |||||||
| TT | 113(66.5) | 77(59.7) | 36(58.1) | 97(63.0) | 1.00 | 1.00 | 1.00 |
| CT | 52(30.6) | 42(32.6) | 22(35.4) | 49(31.9) | 1.21(0.73–2.00) | 1.59(0.81–3.13) | 1.29(0.76–2.20) |
| CC | 5(2.9) | 10(7.8) | 4(6.5) | 8(5.2) | 2.92(0.96–8.92) | 2.33(0.52–10.56) | 2.24(0.65–7.74) |
| Dominant model | 57(33.5) | 52(40.3) | 26(41.9) | 57(47.1) | 1.36(0.84–2.20) | 1.67(0.87–3.19) | 1.38(0.83–2.30) |
| Recessive model | 165(97.1) | 119(92.2) | 58(93.5) | 146(94.8) | 2.74(0.91–8.25) | 1.98(0.25–8.74) | 2.06(0.60–7.01) |
| T allele | 278(81.8) | 196(76.0) | 94(75.8) | 263(78.9) | 1.00 | 1.00 | 1.00 |
| C allele | 62(18.2) | 62(24.0) | 30(24.2) | 65(21.1) | 1.43(0.96–2.13) | 1.56(0.91–2.66) | 1.38(0.90–2.12) |
| P-HWE | 0.737 | 0.219 | 0.797 | 0.581 | |||
Adjusted by age and gender;
Dominant model: CT+CC versus TT;
Recessive model: CC versus TT+CT.
Genotype and allele frequencies of −589C/T and −33C/T polymorphisms between HBV-related patients and healthy controls in males.
| Polymorphisms | Healthycontrols,N = 147(%) | CHBpatientsN = 115(%) | LCpatients,N = 52(%) | HCCpatients,N = 135(%) | CHB patients vs.Healthy controls,OR(95%CI) | LC patients vs.Healthycontrols, OR(95%CI) | HCC patientsvs. Healthycontrols, OR(95%CI) |
| −589C/T | |||||||
| Genotypes | |||||||
| TT | 100(68.0) | 72(62.6) | 31(59.6) | 95(70.4) | 1.00 | 1.00 | 1.00 |
| CT | 44(30.0) | 34(29.6) | 19(36.5) | 36(26.6) | 1.08(0.63–1.86) | 1.92(0.92–4.01) | 1.01(0.57–1.81) |
| CC | 3(2.0) | 9(7.8) | 2(3.9) | 4(3.0) |
| 2.83(0.42–18.88) | 1.59(0.32–7.98) |
| Dominant modelb | 47(32.0) | 43(37.4) | 21(40.4) | 40(29.6) | 1.28(0.76–2.15) | 1.98(0.99–4.08) | 1.05(0.60–1.85) |
| Recessive modelc | 144(98.0) | 106(92.2) | 50(96.1) | 131(97.0) |
| 2.23(0.35–14.43) | 1.58(0.32–7.88) |
| T allele | 244(83.0) | 178(77.4) | 81(77.9) | 226(83.7) | 1.00 | 1.00 | 1.00 |
| C allele | 50(17.0) | 52(22.6) | 23(22.1) | 44(16.3) | 1.43(0.93–2.06) | 1.76(0.97–3.18) | 1.085(0.67–1.77) |
| −33C/T | |||||||
| Genotypes | |||||||
| TT | 98(66.7) | 72(62.6) | 30(57.7) | 84(62.2) | 1.00 | 1.00 | 1.00 |
| CT | 45(30.6) | 33(28.7) | 19(36.5) | 43(31.9) | 1.01(0.58–1.74) | 1.84(0.89–3.82) | 1.37(0.78–2.43) |
| CC | 4(2.7) | 10(8.7) | 3(5.7) | 8(5.9) |
| 2.76(0.51–14.96) | 2.96(0.78–11.22) |
| Dominant modelb | 49(33.3) | 43(37.4) | 22(42.3) | 51(37.8) | 1.20(0.72–2.01) | 1.92(0.95–3.89) | 1.51(0.87–2.61) |
| Recessive modelc | 143(97.3) | 105(91.3) | 49(94.2) | 127(94.1) |
| 2.22(0.43–11.54) | 2.65(0.71–9.90) |
| T allele | 241(82.0) | 177(77.0) | 79(76.0) | 211(78.1) | 1.00 | 1.00 | 1.00 |
| C allele | 53(18.0) | 53(23.0) | 24(24.0) | 59(21.9) | 1.37(0.89–2.10) | 1.73(0.97–3.07) | 1.52(0.96–2.41) |
Adjusted by age and gender;
Dominant model: CT+CC versus TT;
Recessive model: CC versus TT+CT;
*p<0.05.
Comparison of genotype and allele frequencies in the healthy control subjects of our study and that from the HapMap project.
| Polymorphisms | Samples, N | Genotype frequency, n(%) | Alleles frequency, n(%) | |||||
| TT | CT | CC | P values | T | C | P values | ||
| −589C/T | ||||||||
| Present study | 170 | 115(67.6) | 51(30.0) | 4(2.4) | 281(82.6) | 59(17.4) | ||
| HCB | 86 | 50(58.1) | 34(39.5) | 2(2.3) | 0.307 | 134(77.9) | 38(22.1) | 0.196 |
| JPT | 170 | 90(52.9) | 66(38.8) | 14(8.2) | 0.005 | 246(72.4) | 94(27.6) | 0.001 |
| CEU | 226 | 4(1.8) | 54(23.9) | 168(74.3) | 0.000 | 62(13.7) | 390(86.3) | 0.000 |
| YRI | 226 | 140(61.9) | 76(33.6) | 10(4.4) | 0.356 | 356(78.8) | 96(21.2) | 0.172 |
| Chinese | 151 | 92(60.9) | 50(33.1) | 9(6.0) | 0.185 | 234(77.5) | 68(22.5) | 0.101 |
| −33C/T | ||||||||
| Present study | 170 | 113(66.5) | 52(30.6) | 5(2.9) | 278(81.8) | 62(18.2) | ||
| HCB | 86 | 50(58.1) | 34(39.5) | 2(2.3) | 0.357 | 134(77.9) | 38(22.1) | 0.298 |
| JPT | 172 | 90(52.3) | 68(39.5) | 14(8.1) | 0.011 | 248(72.1) | 96(27.9) | 0.003 |
| CEU | 226 | 4(1.8) | 54(23.9) | 168(74.3) | 0.000 | 62(13.7) | 390(86.3) | 0.000 |
| YRI | 226 | 44(19.5) | 126(55.8) | 56(24.8) | 0.000 | 214(47.3) | 238(52.7) | 0.000 |
| HCH | 159 | 104(65.4) | 51(32.1) | 4(2.5) | 0.939 | 259(81.4) | 59(18.6) | 0.916 |
*Data from HapMap Project;
Data from previous reports; HCB, Han Chinese in Beijing, China; JPT, Japanese in Tokyo, Japan; CEU, Utah residents with northern and western European ancestry; YRI, Yoruba in Ibadan, Nigeria; HCH, Han Chinese in Hunan province, China.
Frequencies of the haplotypes formed by −589C/T and −33C/T polymorphisms in HBV-related patients and healthy controls.
| Haplotype | Healthycontrol(%) | CHBPatients(%) | OR(95%CI) | p | LCPatients(%) | OR(95%CI) | p | HCCPatients(%) | OR(95%CI) | p |
| CC | 17.1 | 23.3 | 1.47(0.98–2.20) | 0.061 | 16.5 | 0.96(0.55–1.66) | 0.878 | 14.9 | 0.85(0.56–1.30) | 0.459 |
| CT | 0.3 | 0.4 | - | - | 6.1 | - | - | 0.3 | - | - |
| TC | 1.2 | 0.8 | - | - | 7.7 | - | - | 6.2 | - | - |
| TT | 81.5 | 75.6 | 0.68(0.45–1.02) | 0.061 | 69.7 | 0.52(0.33–0.84) | 0.064 | 78.6 | 0.83(0.57–1.23) | 0.356 |