| Literature DB >> 26599409 |
Xiaolian Zhang1, Limin Zhai1, Chengzhi Rong1, Xue Qin1, Shan Li1.
Abstract
BACKGROUND: The functions of ghrelin (GHRL) include anti-inflammatory effects, reduction of the fibrogenic response, protection of liver tissue, and regulation of cell proliferation. Genetic variations in the GHRL gene may play an important role in the development of chronic hepatitis B (CHB), liver cirrhosis (LC) and hepatocellular carcinoma (HCC). Therefore, we investigated whether GHRL gene polymorphisms and its serum levels are associated with hepatitis B virus (HBV)-related diseases risk in a Chinese population.Entities:
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Year: 2015 PMID: 26599409 PMCID: PMC4658098 DOI: 10.1371/journal.pone.0143069
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primer sequence and the reaction condition for genotyping GHRL polymorphisms.
| SNPs | Primer sequence (5'→3') | Annealing temperature | Restriction enzyme | Product size (bp) |
|---|---|---|---|---|
| GHRL rs26311 | F: GCGTAGATCTTCCACCTCCA | 55°C | BcnI | GG: 228+61 |
| (-1062G>C) | R: CGTTGTTTCCCATGTGCTGT | 37°C for 6h | GC: 289+228+61 | |
| CC: 289 | ||||
| GHRL rs27647 | F: CACAGCAACAAAGCTGCACC | 60°C | Dra-I | TT: 664+265 |
| (-604A/G) | R: AAGTCCAGCCAGAGCATGCC | 37°C for 6h | TC: 929+664+265 | |
| CC: 929 | ||||
| GHRL rs696217 | F: GCTGGGCTCCTACCTGAGC | 60°C | Bsr-I | GG: 517+101 |
| (408C/A) | R: GGACCCTGTTCACTGCCAC | 65°C for 3h | GT: 618+517+101 | |
| TT: 618 | ||||
| GHRL rs34911341 | F: GCTGGGCTCCTACCTGAGC | 60°C | Sac-I | CC: 455+163 |
| (346G/A) | R: GGACCCTGTTCACTGCCAC | 37°C for 6h | CT: 618+455+163 | |
| TT: 618 |
Fig 1PCR-RFLP assay for analyzing the rs26311, rs27647, rs696217, and rs34911341 polymorphisms in GHRL gene.
(a) rs26311—lane M shows DNA marker; lane 1 shows GG genotype; lanes 2, 5, 6, 9, and 10 show GC genotype; lanes 3, 4, 7, and 8 show CC genotype. (b) rs27647—lane M shows DNA marker; lanes 2, 3, 5, 6, and 7 show TT genotype; lane 4 shows TC genotype; lane 1 shows CC genotype. (c) rs696217—lane M shows DNA marker; lanes 1, 2, 5, 6, and 7 show GG genotype; lanes 3 and 4 show GT genotype. (d) rs34911341—lane M shows DNA marker; lanes 1, 3, 4, 5, 6, and 7 show CC genotype; lane 2 show CT genotype.
Demographic and laboratory characteristics of all subjects.
CHB, chronic hepatitis B; LC, liver cirrhosis; HCC, hepatocellular carcinoma; SD, standard deviation; ALT, alanine aminotransferase; AST, aspartate aminotransferase; AFP, alpha-fetoprotein.
| Variables | Controls | CHB | LC | HCC |
|
|---|---|---|---|---|---|
| Overall | 167 | 176 | 106 | 151 | |
| Demographic parameters | |||||
| Gender (M/F) | 144/23 | 149/27 | 88/18 | 131/20 | 0.833 |
| Age (years, mean±SD) | 37.78±11.83 | 39.25±11.49 | 46.82±9.15 | 49.32±11.29 | <0.001 |
| Laboratory parameters (mean±SD) | |||||
| ALT (IU/L) | 23.64±11.15 | 233.40±296.68 | 72.11±84.84 | 53.57±47.25 | <0.001 |
| AST (IU/L) | 21.31±4.71 | 172.29±240.50 | 107.73±102.48 | 62.09±61.02 | <0.001 |
| AFP (ng/mL) | 3.09±1.53 | 65.83±90.90 | 68.08±106.86 | 429.43±522.97 | <0.001 |
Association analysis of GHRL polymorphisms between HBV-related patients and healthy controls.
HBV, hepatitis B virus; SNPs, single nucleotide polymorphisms; CHB, chronic hepatitis B; LC, liver cirrhosis; HCC, hepatocellular carcinoma; OR, odds ratio; CI, confidence interval; HWE, Hardy–Weinberg equilibrium.
| Controls | CHB | LC | HCC | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | N = 167 (%) | N = 176 (%) | OR (95% CI) |
| N = 106 (%) | OR (95% CI) |
| N = 151 (%) | OR (95% CI) |
|
| rs26311 | ||||||||||
| GG | 62 (37.1) | 65 (36.9) | 1 | 29 (27.4) | 1 | 63 (41.7) | 1 | |||
| GC | 76 (45.5) | 80 (45.5) | 0.991 (0.667–1.471) | 0.964 | 53 (50.0) |
|
| 68 (45.0) | 0.996 (0.652–1.552) | 0.986 |
| CC | 29 (17.4) | 31 (17.6) | 1.036 (0.626–1.713) | 0.892 | 24 (22.6) | 1.683 (0.925–3.061) | 0.088 | 20 (13.3) | 0.644 (0.365–1.138) | 0.130 |
| GC+CC | 105 (62.9) | 111 (61.4) | 1.002 (0.689–1.458) | 0.991 | 77 (72.6) |
|
| 88 (58.3) | 0.895 (0.599–1.337) | 0.587 |
| G alleles | 200 (59.9) | 210 (59.7) | 1 | 111 (52.4) | 1 | 194 (64.2) | 1 | |||
| C alleles | 134 (40.1) | 142 (40.3) | 1.017 (0.785–1.317) | 0.900 | 101 (47.6) | 1.343 (0.995–1.813) | 0.054 | 108 (35.8) | 0.845 (0.641–1.115) | 0.233 |
|
| 0.495 | 0.460 | 0.982 | 0.807 | ||||||
| rs27647 | ||||||||||
| TT | 132 (79.0) | 139 (79.0) | 1 | 79 (74.5) | 1 | 119 (78.8) | 1 | |||
| TC | 34 (20.4) | 34 (19.3) | 0.962 (0.664–1.329) | 0.837 | 27 (25.5) | 1.031 (0.659–1.613) | 0.859 | 32 (21.2) | 0.878 (0.593–1.301) | 0.517 |
| CC | 1 (0.6) | 3 (1.7) | 3.287 (0.631–17.115) | 0.158 | 0 (0.0) | - | - | 0 (0.0) | - | - |
| TC+CC | 35 (21.0) | 37 (21.0) | 0.969 (0.691–1.361) | 0.856 | 27 (25.5) | 1.031 (0.659–1.613) | 0.859 | 32 (21.2) | 0.878 (0.593–1.301) | 0.517 |
| T alleles | 298 (89.2) | 312 (88.6) | 1 | 185 (87.3) | 1 | 270 (89.4) | 1 | |||
| C alleles | 36 (10.8) | 40 (11.4) | 1.028 (0.777–1.360) | 0.848 | 27 (12.7) | 1.227 (0.902–1.669) | 0.193 | 32 (10.6) | 0.869 (0.645–1.171) | 0.356 |
|
| 0.449 | 0.586 | 0.133 | 0.145 | ||||||
| rs696217 | ||||||||||
| GG | 112 (67.1) | 111 (63.1) | 1 | 65 (61.3) | 1 | 102 (67.6) | 1 | |||
| GT | 50 (29.9) | 60 (34.1) | 1.264 (0.895–1.785) | 0.183 | 37 (34.9) | 1.349 (0.905–2.011) | 0.141 | 42 (27.8) | 0.891 (0.614–1.293) | 0.544 |
| TT | 5 (3.0) | 5 (2.8) | 1.199 (0.474–3.030) | 0.702 | 4 (3.8) | 1.203 (0.445–3.252) | 0.716 | 7 (4.6) | 1.417 (0.579–3.469) | 0.445 |
| GT+TT | 55 (32.9) | 65 (36.9) | 0.798 (0.578–1.102) | 0.170 | 41 (38.7) | 0.749 (0.516–1.088) | 0.129 | 49 (32.4) | 1.067 (0.757–1.503) | 0.711 |
| G alleles | 274 (82.0) | 282 (80.1) | 1 | 167 (78.8) | 1 | 246 (81.5) | 1 | |||
| T alleles | 60 (18.0) | 70 (19.9) | 1.219 (0.903–1.647) | 0.196 | 45 (21.2) | 1.246 (0.888–1.748) | 0.203 | 56 (18.5) | 1.004 (0.729–1.383) | 0.980 |
|
| 0.838 | 0.354 | 0.652 | 0.330 |
Comparison of genotype and allele frequencies in the healthy controls of the present study and that from the HapMap project.
SNPs, single nucleotide polymorphisms; HCB, Han Chinese in Beijing, China; JPT, Japanese in Tokyo, Japan; CEU, Utah residents with northern and western Europeanancestry; YRI, Yoruba in Ibadan, Nigeria.
| SNPs | Samples, N | Genotype frequency, n (%) |
| Allele frequency, n (%) |
| |||
|---|---|---|---|---|---|---|---|---|
| rs26311 | GG | GC | CC | G | C | |||
| Present Study | 167 | 62 (37.1) | 76 (45.5) | 29 (17.4) | 200 (59.9) | 134 (40.1) | ||
| HCB | 45 | 19 (42.2) | 21 (46.7) | 5 (11.1) | 0.572 | 59 (65.6) | 31 (34.4) | 0.394 |
| JPT | 45 | 19 (42.2) | 21 (46.7) | 5(11.1) | 0.572 | 59 (65.6) | 31 (34.4) | 0.394 |
| CEU | 60 | 44 (73.3) | 14 (23.3) | 2 (3.3) | 0.000 | 102 (85.0) | 18 (15.0) | 0.000 |
| YRI | 60 | 37 (61.7) | 21 (35.0) | 2 (3.3) | 0.001 | 95 (79.2) | 25 (20.8) | 0.000 |
| rs27647 | TT | TC | CC | T | C | |||
| Present Study | 167 | 132 (79.0) | 34 (20.4) | 1 (0.6) | 298 (89.2) | 36 (10.8) | ||
| HCB | 43 | 33 (76.7) | 8 (18.6) | 2 (4.7) | 0.135 | 74 (86.0) | 12 (14.0) | 0.447 |
| JPT | 86 | 68 (79.1) | 18 (20.9) | 0 (0) | 0.770 | 154 (89.5) | 18 (10.5) | 0.914 |
| CEU | 113 | 49 (43.4) | 51 (45.1) | 13 (11.5) | 0.000 | 149 (65.9) | 77 (34.1) | 0.000 |
| YRI | 113 | 62 (54.9) | 39 (34.5) | 12 (10.6) | 0.000 | 163 (72.1) | 63 (27.9) | 0.000 |
| rs696217 | GG | GT | TT | G | T | |||
| Present Study | 167 | 112 (67.1) | 50 (29.9) | 5 (3.0) | 274 (82.0) | 60 (18.0) | ||
| HCB | 43 | 31 (72.1) | 10 (23.3) | 2 (4.7) | 0.624 | 72 (83.7) | 14 (16.3) | 0.874 |
| JPT | 86 | 55 (64.0) | 27 (31.4) | 4 (4.7) | 0.755 | 137 (79.7) | 35 (20.3) | 0.549 |
| CEU | 113 | 95 (84.1) | 15 (13.3) | 3 (2.7) | 0.005 | 205 (90.7) | 21 (9.3) | 0.005 |
| YRI | 113 | 111 (98.2) | 2 (1.8) | 0 (0.0) | 0.000 | 224 (99.1) | 2 (0.9) | 0.000 |
Haplotype distribution in LC patients and healthy controls.
LC, liver cirrhosis; OR, odds ratio; CI, confidence interval.
| Haplotype | Controls | LC | OR (95% CI) |
|
|---|---|---|---|---|
| CCT | 0.020 | 0.027 | 1.375 (0.444–4.254) | 0.579 |
| CTG | 0.328 | 0.358 | 1.143 (0.796–1.641) | 0.470 |
| CTT | 0.053 | 0.091 | 1.786 (0.915–3.488) | 0.086 |
| GCG | 0.077 | 0.080 | 1.046 (0.551–1.983) | 0.891 |
| GCT | 0.014 | 0.020 | 1.442 (0.388–5.362) | 0.583 |
| GTG | 0.416 | 0.350 | 0.756 (0.529–1.080) | 0.124 |
| GTT | 0.092 | 0.074 | 0.781 (0.414–1.473) | 0.444 |
Association of GHRL rs26311 polymorphism with serum GHRL levels (median±IQR, μg/L) in LC patients and healthy controls.
GHRL, ghrelin; LC, liver cirrhosis; IQR, interquartile range;
| Overall | rs26311 genotype | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Groups | GG | GC | CC | ||||||
| N | GHRL levels | N | GHRL levels | N | GHRL levels | N | GHRL levels |
| |
| Controls | 45 | 48.84±33.32 | 12 | 55.25±34.86 | 22 | 42.84±41.43 | 11 | 51.38±18.43 | 0.803 |
| LC | 45 | 17.54±15.59 | 11 | 20.73±20.69 | 24 | 16.75±12.89 | 10 | 18.52±16.60 | 0.631 |
|
| 0.000 | 0.011 | 0.000 | 0.000 | |||||
*Kruskal-Wallis H test, comparing the difference of serum GHRL levels among three different genotypes in the same group
**Mann-Whitney U test, comparing the difference of serum GHRL levels in two groups among the individuals with the same genotype.