Literature DB >> 25288794

Structural basis of allosteric activation of sterile α motif and histidine-aspartate domain-containing protein 1 (SAMHD1) by nucleoside triphosphates.

Leonardus M I Koharudin1, Ying Wu1, Maria DeLucia1, Jennifer Mehrens1, Angela M Gronenborn2, Jinwoo Ahn3.   

Abstract

Sterile α motif and histidine-aspartate domain-containing protein 1 (SAMHD1) plays a critical role in inhibiting HIV infection, curtailing the pool of dNTPs available for reverse transcription of the viral genome. Recent structural data suggested a compelling mechanism for the regulation of SAMHD1 enzymatic activity and revealed dGTP-induced association of two inactive dimers into an active tetrameric enzyme. Here, we present the crystal structures of SAMHD1 catalytic core (residues 113-626) tetramers, complexed with mixtures of nucleotides, including dGTP/dATP, dGTP/dCTP, dGTP/dTTP, and dGTP/dUTP. The combined structural and biochemical data provide insight into dNTP promiscuity at the secondary allosteric site and how enzymatic activity is modulated. In addition, we present biochemical analyses of GTP-induced SAMHD1 full-length tetramerization and the structure of SAMHD1 catalytic core tetramer in complex with GTP/dATP, revealing the structural basis of GTP-mediated SAMHD1 activation. Altogether, the data presented here advance our understanding of SAMHD1 function during cellular homeostasis.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Enzyme Mechanism; Nucleic Acid; Protein Crystallization; SAM Domain and HD Domain-containing Protein 1 (SAMHD1); Structural Biology; X-ray Crystallography

Mesh:

Substances:

Year:  2014        PMID: 25288794      PMCID: PMC4239615          DOI: 10.1074/jbc.M114.591958

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

Review 1.  SAMHD1 host restriction factor: a link with innate immune sensing of retrovirus infection.

Authors:  Alexandre Sze; David Olagnier; Rongtuan Lin; Julien van Grevenynghe; John Hiscott
Journal:  J Mol Biol       Date:  2013-10-23       Impact factor: 5.469

2.  SAMHD1 restricts HIV-1 infection in resting CD4(+) T cells.

Authors:  Hanna-Mari Baldauf; Xiaoyu Pan; Elina Erikson; Sarah Schmidt; Waaqo Daddacha; Manja Burggraf; Kristina Schenkova; Ina Ambiel; Guido Wabnitz; Thomas Gramberg; Sylvia Panitz; Egbert Flory; Nathaniel R Landau; Serkan Sertel; Frank Rutsch; Felix Lasitschka; Baek Kim; Renate König; Oliver T Fackler; Oliver T Keppler
Journal:  Nat Med       Date:  2012-11       Impact factor: 53.440

3.  Intracerebral large artery disease in Aicardi-Goutières syndrome implicates SAMHD1 in vascular homeostasis.

Authors:  Venkateswaran Ramesh; Bruno Bernardi; Altin Stafa; Caterina Garone; Emilio Franzoni; Mario Abinun; Patrick Mitchell; Dipayan Mitra; Mark Friswell; John Nelson; Stavit A Shalev; Gillian I Rice; Hannah Gornall; Marcin Szynkiewicz; François Aymard; Vijeya Ganesan; Julie Prendiville; John H Livingston; Yanick J Crow
Journal:  Dev Med Child Neurol       Date:  2010-08       Impact factor: 5.449

4.  The deoxynucleotide triphosphohydrolase SAMHD1 is a major regulator of DNA precursor pools in mammalian cells.

Authors:  Elisa Franzolin; Giovanna Pontarin; Chiara Rampazzo; Cristina Miazzi; Paola Ferraro; Elisa Palumbo; Peter Reichard; Vera Bianchi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

5.  The retroviral restriction ability of SAMHD1, but not its deoxynucleotide triphosphohydrolase activity, is regulated by phosphorylation.

Authors:  Tommy E White; Alberto Brandariz-Nuñez; Jose Carlos Valle-Casuso; Sarah Amie; Laura Anh Nguyen; Baek Kim; Marina Tuzova; Felipe Diaz-Griffero
Journal:  Cell Host Microbe       Date:  2013-04-17       Impact factor: 21.023

Review 6.  Intracellular nucleotide levels and the control of retroviral infections.

Authors:  Sarah M Amie; Erin Noble; Baek Kim
Journal:  Virology       Date:  2012-12-20       Impact factor: 3.616

7.  Characterization of the deoxynucleotide triphosphate triphosphohydrolase (dNTPase) activity of the EF1143 protein from Enterococcus faecalis and crystal structure of the activator-substrate complex.

Authors:  Ivan I Vorontsov; George Minasov; Olga Kiryukhina; Joseph S Brunzelle; Ludmilla Shuvalova; Wayne F Anderson
Journal:  J Biol Chem       Date:  2011-07-13       Impact factor: 5.157

8.  Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.

Authors:  Kasia Hrecka; Caili Hao; Magda Gierszewska; Selene K Swanson; Malgorzata Kesik-Brodacka; Smita Srivastava; Laurence Florens; Michael P Washburn; Jacek Skowronski
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

9.  Tetramerization of SAMHD1 is required for biological activity and inhibition of HIV infection.

Authors:  Junpeng Yan; Sarabpreet Kaur; Maria DeLucia; Caili Hao; Jennifer Mehrens; Chuanping Wang; Marcin Golczak; Krzysztof Palczewski; Angela M Gronenborn; Jinwoo Ahn; Jacek Skowronski
Journal:  J Biol Chem       Date:  2013-02-20       Impact factor: 5.157

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  36 in total

1.  Structural Insights into the High-efficiency Catalytic Mechanism of the Sterile α-Motif/Histidine-Aspartate Domain-containing Protein.

Authors:  Yanhong Li; Jia Kong; Xin Peng; Wen Hou; Xiaohong Qin; Xiao-Fang Yu
Journal:  J Biol Chem       Date:  2015-10-05       Impact factor: 5.157

Review 2.  HIV suppression by host restriction factors and viral immune evasion.

Authors:  Xiaofei Jia; Qi Zhao; Yong Xiong
Journal:  Curr Opin Struct Biol       Date:  2015-05-16       Impact factor: 6.809

3.  CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain.

Authors:  Junpeng Yan; Caili Hao; Maria DeLucia; Selene Swanson; Laurence Florens; Michael P Washburn; Jinwoo Ahn; Jacek Skowronski
Journal:  J Biol Chem       Date:  2015-04-06       Impact factor: 5.157

4.  The SAMHD1 dNTP Triphosphohydrolase Is Controlled by a Redox Switch.

Authors:  Christopher H Mauney; LeAnn C Rogers; Reuben S Harris; Larry W Daniel; Nelmi O Devarie-Baez; Hanzhi Wu; Cristina M Furdui; Leslie B Poole; Fred W Perrino; Thomas Hollis
Journal:  Antioxid Redox Signal       Date:  2017-04-18       Impact factor: 8.401

5.  A Highly Active Isoform of Lentivirus Restriction Factor SAMHD1 in Mouse.

Authors:  Nicolin Bloch; Sabine Gläsker; Poojitha Sitaram; Henning Hofmann; Caitlin N Shepard; Megan L Schultz; Baek Kim; Nathaniel R Landau
Journal:  J Biol Chem       Date:  2016-12-05       Impact factor: 5.157

Review 6.  Deoxyribonucleotide metabolism, mutagenesis and cancer.

Authors:  Christopher K Mathews
Journal:  Nat Rev Cancer       Date:  2015-09       Impact factor: 60.716

7.  SAMHD1 deficient human monocytes autonomously trigger type I interferon.

Authors:  Alicia Martinez-Lopez; Marta Martin-Fernandez; Sofija Buta; Baek Kim; Dusan Bogunovic; Felipe Diaz-Griffero
Journal:  Mol Immunol       Date:  2018-08-09       Impact factor: 4.407

8.  Substrate Specificity of SAMHD1 Triphosphohydrolase Activity Is Controlled by Deoxyribonucleoside Triphosphates and Phosphorylation at Thr592.

Authors:  Sunbok Jang; Xiaohong Zhou; Jinwoo Ahn
Journal:  Biochemistry       Date:  2016-09-19       Impact factor: 3.162

9.  Allosteric Activation of SAMHD1 Protein by Deoxynucleotide Triphosphate (dNTP)-dependent Tetramerization Requires dNTP Concentrations That Are Similar to dNTP Concentrations Observed in Cycling T Cells.

Authors:  Zhonghua Wang; Akash Bhattacharya; Jessica Villacorta; Felipe Diaz-Griffero; Dmitri N Ivanov
Journal:  J Biol Chem       Date:  2016-08-26       Impact factor: 5.157

10.  Low dNTP levels are necessary but may not be sufficient for lentiviral restriction by SAMHD1.

Authors:  Sarah Welbourn; Klaus Strebel
Journal:  Virology       Date:  2015-12-04       Impact factor: 3.616

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