Literature DB >> 23260109

Intracellular nucleotide levels and the control of retroviral infections.

Sarah M Amie1, Erin Noble, Baek Kim.   

Abstract

Retroviruses consume cellular deoxynucleoside triphosphates (dNTPs) to convert their RNA genomes into proviral DNA through reverse transcription. While all retroviruses replicate in dividing cells, lentiviruses uniquely replicate in nondividing cells such as macrophages. Importantly, dNTP levels in nondividing cells are extremely low, compared to dividing cells. Indeed, a recently discovered anti-HIV/SIV restriction factor, SAMHD1, which is a dNTP triphosphohydrolase, is responsible for the limited dNTP pool of nondividing cells. Lentiviral reverse transcriptases (RT) uniquely stay functional even at the low dNTP concentrations in nondividing cells. Interestingly, Vpx of HIV-2/SIVsm proteosomally degrades SAMHD1, which elevates cellular dNTP pools and accelerates lentiviral replication in nondividing cells. These Vpx-encoding lentiviruses rapidly replicate in nondividing cells by encoding both highly functional RTs and Vpx. Here, we discuss a series of mechanistic and virological studies that have contributed to conceptually linking cellular dNTP levels and the adaptation of lentiviral replication in nondividing cells.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23260109      PMCID: PMC3804251          DOI: 10.1016/j.virol.2012.11.010

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  74 in total

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Journal:  Chem Biol       Date:  1999-05

2.  HIV-1-associated uracil DNA glycosylase activity controls dUTP misincorporation in viral DNA and is essential to the HIV-1 life cycle.

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3.  RNase H requirements for the second strand transfer reaction of human immunodeficiency virus type 1 reverse transcription.

Authors:  C M Smith; J S Smith; M J Roth
Journal:  J Virol       Date:  1999-08       Impact factor: 5.103

4.  Reduced dNTP interaction of human immunodeficiency virus type 1 reverse transcriptase promotes strand transfer.

Authors:  Darwin J Operario; Mini Balakrishnan; Robert A Bambara; Baek Kim
Journal:  J Biol Chem       Date:  2006-08-21       Impact factor: 5.157

5.  Mechanistic differences in RNA-dependent DNA polymerization and fidelity between murine leukemia virus and HIV-1 reverse transcriptases.

Authors:  Mark Skasko; Kellie K Weiss; Holly M Reynolds; Varuni Jamburuthugoda; Kwi Lee; Baek Kim
Journal:  J Biol Chem       Date:  2005-01-10       Impact factor: 5.157

6.  Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase.

Authors:  Tracy L Diamond; Mikhail Roshal; Varuni K Jamburuthugoda; Holly M Reynolds; Aaron R Merriam; Kwi Y Lee; Mini Balakrishnan; Robert A Bambara; Vicente Planelles; Stephen Dewhurst; Baek Kim
Journal:  J Biol Chem       Date:  2004-09-26       Impact factor: 5.157

7.  Modification of human immunodeficiency virus type 1 reverse transcriptase to target cells with elevated cellular dNTP concentrations.

Authors:  Varuni K Jamburuthugoda; Pauline Chugh; Baek Kim
Journal:  J Biol Chem       Date:  2006-02-22       Impact factor: 5.157

8.  SIVSM/HIV-2 Vpx proteins promote retroviral escape from a proteasome-dependent restriction pathway present in human dendritic cells.

Authors:  Caroline Goujon; Lise Rivière; Loraine Jarrosson-Wuilleme; Jeanine Bernaud; Dominique Rigal; Jean-Luc Darlix; Andrea Cimarelli
Journal:  Retrovirology       Date:  2007-01-09       Impact factor: 4.602

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Journal:  Am J Hum Genet       Date:  2007-09-04       Impact factor: 11.025

10.  Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection.

Authors:  Yanick J Crow; Andrea Leitch; Bruce E Hayward; Anna Garner; Rekha Parmar; Elen Griffith; Manir Ali; Colin Semple; Jean Aicardi; Riyana Babul-Hirji; Clarisse Baumann; Peter Baxter; Enrico Bertini; Kate E Chandler; David Chitayat; Daniel Cau; Catherine Déry; Elisa Fazzi; Cyril Goizet; Mary D King; Joerg Klepper; Didier Lacombe; Giovanni Lanzi; Hermione Lyall; María Luisa Martínez-Frías; Michèle Mathieu; Carole McKeown; Anne Monier; Yvette Oade; Oliver W Quarrell; Christopher D Rittey; R Curtis Rogers; Amparo Sanchis; John B P Stephenson; Uta Tacke; Marianne Till; John L Tolmie; Pam Tomlin; Thomas Voit; Bernhard Weschke; C Geoffrey Woods; Pierre Lebon; David T Bonthron; Chris P Ponting; Andrew P Jackson
Journal:  Nat Genet       Date:  2006-07-16       Impact factor: 38.330

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  50 in total

Review 1.  The high cost of fidelity.

Authors:  Sarah B Lloyd; Stephen J Kent; Wendy R Winnall
Journal:  AIDS Res Hum Retroviruses       Date:  2014-01       Impact factor: 2.205

Review 2.  HIV-1 capsid: the multifaceted key player in HIV-1 infection.

Authors:  Edward M Campbell; Thomas J Hope
Journal:  Nat Rev Microbiol       Date:  2015-08       Impact factor: 60.633

3.  USP18 (UBP43) Abrogates p21-Mediated Inhibition of HIV-1.

Authors:  Edmund Osei Kuffour; Kerstin Schott; Ananda Ayyappan Jaguva Vasudevan; Jessica Holler; Wolfgang A Schulz; Philipp A Lang; Karl S Lang; Baek Kim; Dieter Häussinger; Renate König; Carsten Münk
Journal:  J Virol       Date:  2018-09-26       Impact factor: 5.103

4.  Substrate Specificity of SAMHD1 Triphosphohydrolase Activity Is Controlled by Deoxyribonucleoside Triphosphates and Phosphorylation at Thr592.

Authors:  Sunbok Jang; Xiaohong Zhou; Jinwoo Ahn
Journal:  Biochemistry       Date:  2016-09-19       Impact factor: 3.162

5.  Metabolic profiling during HIV-1 and HIV-2 infection of primary human monocyte-derived macrophages.

Authors:  Joseph A Hollenbaugh; Catherine Montero; Raymond F Schinazi; Joshua Munger; Baek Kim
Journal:  Virology       Date:  2016-02-16       Impact factor: 3.616

Review 6.  Mechanistic cross-talk between DNA/RNA polymerase enzyme kinetics and nucleotide substrate availability in cells: Implications for polymerase inhibitor discovery.

Authors:  Si'Ana A Coggins; Bijan Mahboubi; Raymond F Schinazi; Baek Kim
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

7.  Restricted 5'-end gap repair of HIV-1 integration due to limited cellular dNTP concentrations in human primary macrophages.

Authors:  Sarah K Van Cor-Hosmer; Dong-Hyun Kim; Michele B Daly; Waaqo Daddacha; Baek Kim
Journal:  J Biol Chem       Date:  2013-10-04       Impact factor: 5.157

8.  Effect of mutations at position E138 in HIV-1 reverse transcriptase and their interactions with the M184I mutation on defining patterns of resistance to nonnucleoside reverse transcriptase inhibitors rilpivirine and etravirine.

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Journal:  Antimicrob Agents Chemother       Date:  2013-04-22       Impact factor: 5.191

9.  Effect of ribonucleotides embedded in a DNA template on HIV-1 reverse transcription kinetics and fidelity.

Authors:  Waaqo Daddacha; Erin Noble; Laura A Nguyen; Edward M Kennedy; Baek Kim
Journal:  J Biol Chem       Date:  2013-03-11       Impact factor: 5.157

10.  Restriction of virus infection but not catalytic dNTPase activity is regulated by phosphorylation of SAMHD1.

Authors:  Sarah Welbourn; Sucharita M Dutta; O John Semmes; Klaus Strebel
Journal:  J Virol       Date:  2013-08-21       Impact factor: 5.103

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