Literature DB >> 26438820

Structural Insights into the High-efficiency Catalytic Mechanism of the Sterile α-Motif/Histidine-Aspartate Domain-containing Protein.

Yanhong Li1, Jia Kong1, Xin Peng1, Wen Hou1, Xiaohong Qin2, Xiao-Fang Yu3.   

Abstract

Sterile α-motif/histidine-aspartate domain-containing protein (SAMHD1), a homo-tetrameric GTP/dGTP-dependent dNTP triphosphohydrolase, catalyzes the conversion of dNTP into deoxynucleoside and triphosphate. As the only characterized dNTP triphosphohydrolase in human cells, SAMHD1 plays an important role in human innate immunity, autoimmunity, and cell cycle control. Previous biochemical studies and crystal structures have revealed that SAMHD1 interconverts between an inactive monomeric or dimeric form and a dGTP/GTP-induced active tetrameric form. Here, we describe a novel state of SAMHD1 (109-626 amino acids, SAMHD1C) that is characterized by a rapid initial hydrolysis rate. Interestingly, the crystal structure showed that this novel SAMHD1 tetramer contains only GTP and has structural features distinct from the GTP/dNTP-bound SAMHD1 tetramer. Our work thus reveals structural features of SAMHD1 that may represent one of its biological assembly states in cells. The biochemical and structural information generated by the present study not only provides an ordered pathway for the assembly and activation of SAMHD1 but also provides insights into the potential mechanisms of the high-efficiency catalytic activity of this enzyme family in vivo.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  SAM domain- and HD domain-containing protein 1 (SAMHD1); dNTPase; enzyme catalysis; human immunodeficiency virus (HIV); innate immunity; lentivirus; restriction factor

Mesh:

Substances:

Year:  2015        PMID: 26438820      PMCID: PMC4705945          DOI: 10.1074/jbc.M115.663658

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  SAMHD1 restricts HIV-1 infection in resting CD4(+) T cells.

Authors:  Hanna-Mari Baldauf; Xiaoyu Pan; Elina Erikson; Sarah Schmidt; Waaqo Daddacha; Manja Burggraf; Kristina Schenkova; Ina Ambiel; Guido Wabnitz; Thomas Gramberg; Sylvia Panitz; Egbert Flory; Nathaniel R Landau; Serkan Sertel; Frank Rutsch; Felix Lasitschka; Baek Kim; Renate König; Oliver T Fackler; Oliver T Keppler
Journal:  Nat Med       Date:  2012-11       Impact factor: 53.440

2.  The deoxynucleotide triphosphohydrolase SAMHD1 is a major regulator of DNA precursor pools in mammalian cells.

Authors:  Elisa Franzolin; Giovanna Pontarin; Chiara Rampazzo; Cristina Miazzi; Paola Ferraro; Elisa Palumbo; Peter Reichard; Vera Bianchi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

3.  The retroviral restriction ability of SAMHD1, but not its deoxynucleotide triphosphohydrolase activity, is regulated by phosphorylation.

Authors:  Tommy E White; Alberto Brandariz-Nuñez; Jose Carlos Valle-Casuso; Sarah Amie; Laura Anh Nguyen; Baek Kim; Marina Tuzova; Felipe Diaz-Griffero
Journal:  Cell Host Microbe       Date:  2013-04-17       Impact factor: 21.023

4.  The effects of dNTP pool imbalances on frameshift fidelity during DNA replication.

Authors:  K Bebenek; J D Roberts; T A Kunkel
Journal:  J Biol Chem       Date:  1992-02-25       Impact factor: 5.157

5.  Structural basis of allosteric activation of sterile α motif and histidine-aspartate domain-containing protein 1 (SAMHD1) by nucleoside triphosphates.

Authors:  Leonardus M I Koharudin; Ying Wu; Maria DeLucia; Jennifer Mehrens; Angela M Gronenborn; Jinwoo Ahn
Journal:  J Biol Chem       Date:  2014-10-06       Impact factor: 5.157

6.  Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.

Authors:  Kasia Hrecka; Caili Hao; Magda Gierszewska; Selene K Swanson; Malgorzata Kesik-Brodacka; Smita Srivastava; Laurence Florens; Michael P Washburn; Jacek Skowronski
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

7.  SIVSM/HIV-2 Vpx proteins promote retroviral escape from a proteasome-dependent restriction pathway present in human dendritic cells.

Authors:  Caroline Goujon; Lise Rivière; Loraine Jarrosson-Wuilleme; Jeanine Bernaud; Dominique Rigal; Jean-Luc Darlix; Andrea Cimarelli
Journal:  Retrovirology       Date:  2007-01-09       Impact factor: 4.602

8.  Tetramerization of SAMHD1 is required for biological activity and inhibition of HIV infection.

Authors:  Junpeng Yan; Sarabpreet Kaur; Maria DeLucia; Caili Hao; Jennifer Mehrens; Chuanping Wang; Marcin Golczak; Krzysztof Palczewski; Angela M Gronenborn; Jinwoo Ahn; Jacek Skowronski
Journal:  J Biol Chem       Date:  2013-02-20       Impact factor: 5.157

9.  Restriction of diverse retroviruses by SAMHD1.

Authors:  Thomas Gramberg; Tanja Kahle; Nicolin Bloch; Sabine Wittmann; Erik Müllers; Waaqo Daddacha; Henning Hofmann; Baek Kim; Dirk Lindemann; Nathaniel R Landau
Journal:  Retrovirology       Date:  2013-03-05       Impact factor: 4.602

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  7 in total

1.  Molecular dynamics characterization of the SAMHD1 Aicardi-Goutières Arg145Gln mutant: structural determinants for the impaired tetramerization.

Authors:  Francesca Cardamone; Mattia Falconi; Alessandro Desideri
Journal:  J Comput Aided Mol Des       Date:  2018-03-28       Impact factor: 3.686

2.  A molecular dynamics simulation study decodes the early stage of the disassembly process abolishing the human SAMHD1 function.

Authors:  Francesca Cardamone; Federico Iacovelli; Giovanni Chillemi; Mattia Falconi; Alessandro Desideri
Journal:  J Comput Aided Mol Des       Date:  2017-03-01       Impact factor: 3.686

Review 3.  SAMHD1: Recurring roles in cell cycle, viral restriction, cancer, and innate immunity.

Authors:  Christopher H Mauney; Thomas Hollis
Journal:  Autoimmunity       Date:  2018-03-27       Impact factor: 2.815

Review 4.  The Dynamic Interplay between HIV-1, SAMHD1, and the Innate Antiviral Response.

Authors:  Jenna M Antonucci; Corine St Gelais; Li Wu
Journal:  Front Immunol       Date:  2017-11-10       Impact factor: 7.561

Review 5.  The missing link: allostery and catalysis in the anti-viral protein SAMHD1.

Authors:  Elizabeth R Morris; Ian A Taylor
Journal:  Biochem Soc Trans       Date:  2019-07-11       Impact factor: 5.407

Review 6.  Dendritic Cells, the Double Agent in the War Against HIV-1.

Authors:  Alba Martín-Moreno; Mª Angeles Muñoz-Fernández
Journal:  Front Immunol       Date:  2019-10-23       Impact factor: 7.561

Review 7.  SAMHD1 in cancer: curse or cure?

Authors:  Kerstin Schott; Catharina Majer; Alla Bulashevska; Liam Childs; Mirko H H Schmidt; Krishnaraj Rajalingam; Markus Munder; Renate König
Journal:  J Mol Med (Berl)       Date:  2021-09-04       Impact factor: 4.599

  7 in total

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